Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.72■■□□□ 1.07
VRK3Q8IV63 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VRK3Q8IV63 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VRK3Q8IV63 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VRK3Q8IV63 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VRK3Q8IV63 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
VRK3Q8IV63 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC21.71■■□□□ 1.07
VRK3Q8IV63 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.71■■□□□ 1.07
VRK3Q8IV63 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.71■■□□□ 1.07
VRK3Q8IV63 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC21.71■■□□□ 1.07
VRK3Q8IV63 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.71■■□□□ 1.07
VRK3Q8IV63 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.7■■□□□ 1.07
VRK3Q8IV63 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VRK3Q8IV63 SYT6-210ENST00000641643 1587 ntBASIC21.7■■□□□ 1.06
VRK3Q8IV63 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
VRK3Q8IV63 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VRK3Q8IV63 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VRK3Q8IV63 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.7■■□□□ 1.06
VRK3Q8IV63 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC21.7■■□□□ 1.06
VRK3Q8IV63 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.7■■□□□ 1.06
VRK3Q8IV63 AC092171.4-201ENST00000609130 632 ntBASIC21.7■■□□□ 1.06
VRK3Q8IV63 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VRK3Q8IV63 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VRK3Q8IV63 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VRK3Q8IV63 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.7■■□□□ 1.06
VRK3Q8IV63 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
VRK3Q8IV63 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VRK3Q8IV63 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.69■■□□□ 1.06
VRK3Q8IV63 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VRK3Q8IV63 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VRK3Q8IV63 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
VRK3Q8IV63 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VRK3Q8IV63 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.69■■□□□ 1.06
VRK3Q8IV63 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.69■■□□□ 1.06
VRK3Q8IV63 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VRK3Q8IV63 AC133637.1-201ENST00000624115 1537 ntBASIC21.69■■□□□ 1.06
VRK3Q8IV63 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
VRK3Q8IV63 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VRK3Q8IV63 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.68■■□□□ 1.06
VRK3Q8IV63 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
VRK3Q8IV63 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
VRK3Q8IV63 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.68■■□□□ 1.06
VRK3Q8IV63 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
VRK3Q8IV63 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.68■■□□□ 1.06
VRK3Q8IV63 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VRK3Q8IV63 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.68■■□□□ 1.06
VRK3Q8IV63 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC21.68■■□□□ 1.06
VRK3Q8IV63 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
VRK3Q8IV63 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
VRK3Q8IV63 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VRK3Q8IV63 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
VRK3Q8IV63 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
VRK3Q8IV63 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
VRK3Q8IV63 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.67■■□□□ 1.06
VRK3Q8IV63 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.67■■□□□ 1.06
VRK3Q8IV63 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VRK3Q8IV63 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VRK3Q8IV63 UNC93B3-201ENST00000308076 687 ntBASIC21.67■■□□□ 1.06
VRK3Q8IV63 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC21.67■■□□□ 1.06
VRK3Q8IV63 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VRK3Q8IV63 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
VRK3Q8IV63 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VRK3Q8IV63 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
VRK3Q8IV63 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.66■■□□□ 1.06
VRK3Q8IV63 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VRK3Q8IV63 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
VRK3Q8IV63 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
VRK3Q8IV63 HES6-206ENST00000409574 738 ntTSL 2 BASIC21.66■■□□□ 1.06
VRK3Q8IV63 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.66■■□□□ 1.06
VRK3Q8IV63 AC096631.2-201ENST00000436136 790 ntBASIC21.66■■□□□ 1.06
VRK3Q8IV63 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
VRK3Q8IV63 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.66■■□□□ 1.06
VRK3Q8IV63 DUX4L19-201ENST00000557448 1267 ntBASIC21.66■■□□□ 1.06
VRK3Q8IV63 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
VRK3Q8IV63 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VRK3Q8IV63 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
VRK3Q8IV63 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VRK3Q8IV63 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.65■■□□□ 1.06
VRK3Q8IV63 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC21.65■■□□□ 1.06
VRK3Q8IV63 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
VRK3Q8IV63 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.65■■□□□ 1.06
VRK3Q8IV63 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
VRK3Q8IV63 SF1-220ENST00000626028 704 ntTSL 2 BASIC21.64■■□□□ 1.05
VRK3Q8IV63 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
VRK3Q8IV63 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
VRK3Q8IV63 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VRK3Q8IV63 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
VRK3Q8IV63 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
VRK3Q8IV63 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VRK3Q8IV63 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VRK3Q8IV63 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
VRK3Q8IV63 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.63■■□□□ 1.05
VRK3Q8IV63 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
VRK3Q8IV63 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VRK3Q8IV63 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
VRK3Q8IV63 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VRK3Q8IV63 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VRK3Q8IV63 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.63■■□□□ 1.05
VRK3Q8IV63 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC21.63■■□□□ 1.05
VRK3Q8IV63 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms