Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LIM2P55344 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LIM2P55344 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.04■□□□□ 0.96
LIM2P55344 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
LIM2P55344 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LIM2P55344 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.03■□□□□ 0.96
LIM2P55344 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
LIM2P55344 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.03■□□□□ 0.96
LIM2P55344 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
LIM2P55344 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
LIM2P55344 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
LIM2P55344 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.03■□□□□ 0.96
LIM2P55344 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIM2P55344 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.02■□□□□ 0.96
LIM2P55344 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
LIM2P55344 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIM2P55344 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC21.02■□□□□ 0.96
LIM2P55344 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.02■□□□□ 0.96
LIM2P55344 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC21.02■□□□□ 0.96
LIM2P55344 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.02■□□□□ 0.96
LIM2P55344 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
LIM2P55344 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.02■□□□□ 0.96
LIM2P55344 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
LIM2P55344 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.01■□□□□ 0.95
LIM2P55344 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIM2P55344 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
LIM2P55344 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
LIM2P55344 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC21.01■□□□□ 0.95
LIM2P55344 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.01■□□□□ 0.95
LIM2P55344 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIM2P55344 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIM2P55344 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
LIM2P55344 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.01■□□□□ 0.95
LIM2P55344 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LIM2P55344 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
LIM2P55344 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21■□□□□ 0.95
LIM2P55344 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LIM2P55344 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21■□□□□ 0.95
LIM2P55344 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21■□□□□ 0.95
LIM2P55344 DUX4L19-201ENST00000557448 1267 ntBASIC21■□□□□ 0.95
LIM2P55344 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21■□□□□ 0.95
LIM2P55344 AL499627.2-201ENST00000606283 725 ntBASIC21■□□□□ 0.95
LIM2P55344 pRNA.6-201ENST00000610482 90 ntBASIC21■□□□□ 0.95
LIM2P55344 pRNA.5-201ENST00000612139 90 ntBASIC21■□□□□ 0.95
LIM2P55344 pRNA.11-201ENST00000618423 90 ntBASIC21■□□□□ 0.95
LIM2P55344 pRNA.13-201ENST00000619112 90 ntBASIC21■□□□□ 0.95
LIM2P55344 SYT6-210ENST00000641643 1587 ntBASIC21■□□□□ 0.95
LIM2P55344 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21■□□□□ 0.95
LIM2P55344 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
LIM2P55344 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
LIM2P55344 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
LIM2P55344 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21■□□□□ 0.95
LIM2P55344 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.99■□□□□ 0.95
LIM2P55344 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIM2P55344 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIM2P55344 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LIM2P55344 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.99■□□□□ 0.95
LIM2P55344 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIM2P55344 MIR3181-201ENST00000578512 73 ntBASIC20.99■□□□□ 0.95
LIM2P55344 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.99■□□□□ 0.95
LIM2P55344 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIM2P55344 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIM2P55344 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIM2P55344 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIM2P55344 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIM2P55344 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIM2P55344 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIM2P55344 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
LIM2P55344 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.98■□□□□ 0.95
LIM2P55344 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIM2P55344 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIM2P55344 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
LIM2P55344 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIM2P55344 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIM2P55344 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIM2P55344 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.97■□□□□ 0.95
LIM2P55344 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIM2P55344 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIM2P55344 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.97■□□□□ 0.95
LIM2P55344 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.97■□□□□ 0.95
LIM2P55344 SERBP1P1-201ENST00000396021 1160 ntBASIC20.97■□□□□ 0.95
LIM2P55344 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.97■□□□□ 0.95
LIM2P55344 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.97■□□□□ 0.95
LIM2P55344 AC233723.2-201ENST00000623798 2106 ntBASIC20.97■□□□□ 0.95
LIM2P55344 AL117328.2-201ENST00000624617 1940 ntBASIC20.97■□□□□ 0.95
LIM2P55344 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIM2P55344 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LIM2P55344 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LIM2P55344 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIM2P55344 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIM2P55344 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
LIM2P55344 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIM2P55344 C1orf229-201ENST00000623686 2258 ntBASIC20.96■□□□□ 0.95
LIM2P55344 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIM2P55344 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIM2P55344 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LIM2P55344 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIM2P55344 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.96■□□□□ 0.95
LIM2P55344 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.96■□□□□ 0.95
LIM2P55344 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms