Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA3P55318 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
FOXA3P55318 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA3P55318 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
FOXA3P55318 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA3P55318 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC16.57■□□□□ 0.24
FOXA3P55318 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA3P55318 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA3P55318 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA3P55318 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA3P55318 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA3P55318 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC16.57■□□□□ 0.24
FOXA3P55318 AC026310.3-201ENST00000625186 2373 ntBASIC16.57■□□□□ 0.24
FOXA3P55318 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA3P55318 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA3P55318 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA3P55318 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
FOXA3P55318 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA3P55318 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA3P55318 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC16.56■□□□□ 0.24
FOXA3P55318 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA3P55318 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC16.56■□□□□ 0.24
FOXA3P55318 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
FOXA3P55318 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA3P55318 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA3P55318 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
FOXA3P55318 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA3P55318 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
FOXA3P55318 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA3P55318 GFER-205ENST00000569451 517 ntTSL 5 BASIC16.56■□□□□ 0.24
FOXA3P55318 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA3P55318 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
FOXA3P55318 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA3P55318 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA3P55318 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
FOXA3P55318 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
FOXA3P55318 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA3P55318 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA3P55318 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
FOXA3P55318 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA3P55318 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA3P55318 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA3P55318 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
FOXA3P55318 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
FOXA3P55318 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA3P55318 AC079630.1-202ENST00000618127 1840 ntBASIC16.55■□□□□ 0.24
FOXA3P55318 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC16.55■□□□□ 0.24
FOXA3P55318 RAP2CP1-202ENST00000605179 643 ntBASIC16.55■□□□□ 0.24
FOXA3P55318 GDI1-215ENST00000630693 786 ntTSL 4 BASIC16.55■□□□□ 0.24
FOXA3P55318 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA3P55318 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA3P55318 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
FOXA3P55318 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
FOXA3P55318 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA3P55318 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA3P55318 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA3P55318 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA3P55318 AL121603.2-201ENST00000557373 2117 ntBASIC16.54■□□□□ 0.24
FOXA3P55318 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA3P55318 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA3P55318 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA3P55318 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA3P55318 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC16.54■□□□□ 0.24
FOXA3P55318 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA3P55318 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC16.54■□□□□ 0.24
FOXA3P55318 MIR3648-2-201ENST00000581792 180 ntBASIC16.54■□□□□ 0.24
FOXA3P55318 AC026202.3-201ENST00000600805 1127 ntBASIC16.54■□□□□ 0.24
FOXA3P55318 MIR3648-1-201ENST00000615959 180 ntBASIC16.54■□□□□ 0.24
FOXA3P55318 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA3P55318 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA3P55318 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA3P55318 PALM-208ENST00000592155 2272 ntTSL 4 BASIC16.54■□□□□ 0.24
FOXA3P55318 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA3P55318 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA3P55318 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA3P55318 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA3P55318 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC16.54■□□□□ 0.24
FOXA3P55318 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
FOXA3P55318 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA3P55318 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
FOXA3P55318 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
FOXA3P55318 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC16.53■□□□□ 0.24
FOXA3P55318 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC16.53■□□□□ 0.24
FOXA3P55318 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA3P55318 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
FOXA3P55318 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA3P55318 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA3P55318 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
FOXA3P55318 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC16.53■□□□□ 0.24
FOXA3P55318 AC080038.3-201ENST00000623346 1952 ntBASIC16.53■□□□□ 0.24
FOXA3P55318 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA3P55318 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
FOXA3P55318 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA3P55318 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC16.52■□□□□ 0.24
FOXA3P55318 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA3P55318 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.24
FOXA3P55318 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA3P55318 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.24
FOXA3P55318 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA3P55318 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms