Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
SHMT2P34897 SERBP1P1-201ENST00000396021 1160 ntBASIC21.65■■□□□ 1.06
SHMT2P34897 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SHMT2P34897 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SHMT2P34897 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SHMT2P34897 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SHMT2P34897 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SHMT2P34897 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SHMT2P34897 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
SHMT2P34897 AC135279.3-201ENST00000610945 1311 ntBASIC21.64■■□□□ 1.05
SHMT2P34897 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.64■■□□□ 1.05
SHMT2P34897 PBX2P1-201ENST00000493219 1291 ntBASIC21.64■■□□□ 1.05
SHMT2P34897 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.64■■□□□ 1.05
SHMT2P34897 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SHMT2P34897 AC106739.1-201ENST00000617035 715 ntBASIC21.64■■□□□ 1.05
SHMT2P34897 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.64■■□□□ 1.05
SHMT2P34897 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SHMT2P34897 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.64■■□□□ 1.05
SHMT2P34897 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
SHMT2P34897 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SHMT2P34897 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.63■■□□□ 1.05
SHMT2P34897 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.63■■□□□ 1.05
SHMT2P34897 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.63■■□□□ 1.05
SHMT2P34897 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.63■■□□□ 1.05
SHMT2P34897 MIR3181-201ENST00000578512 73 ntBASIC21.63■■□□□ 1.05
SHMT2P34897 AC011298.3-201ENST00000615796 283 ntBASIC21.63■■□□□ 1.05
SHMT2P34897 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SHMT2P34897 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.63■■□□□ 1.05
SHMT2P34897 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
SHMT2P34897 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
SHMT2P34897 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SHMT2P34897 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.62■■□□□ 1.05
SHMT2P34897 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SHMT2P34897 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.62■■□□□ 1.05
SHMT2P34897 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.62■■□□□ 1.05
SHMT2P34897 pRNA.6-201ENST00000610482 90 ntBASIC21.62■■□□□ 1.05
SHMT2P34897 pRNA.5-201ENST00000612139 90 ntBASIC21.62■■□□□ 1.05
SHMT2P34897 pRNA.11-201ENST00000618423 90 ntBASIC21.62■■□□□ 1.05
SHMT2P34897 pRNA.13-201ENST00000619112 90 ntBASIC21.62■■□□□ 1.05
SHMT2P34897 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SHMT2P34897 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.62■■□□□ 1.05
SHMT2P34897 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.62■■□□□ 1.05
SHMT2P34897 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SHMT2P34897 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SHMT2P34897 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
SHMT2P34897 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
SHMT2P34897 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
SHMT2P34897 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.62■■□□□ 1.05
SHMT2P34897 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.61■■□□□ 1.05
SHMT2P34897 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.61■■□□□ 1.05
SHMT2P34897 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHMT2P34897 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
SHMT2P34897 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.61■■□□□ 1.05
SHMT2P34897 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
SHMT2P34897 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHMT2P34897 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.61■■□□□ 1.05
SHMT2P34897 HES6-206ENST00000409574 738 ntTSL 2 BASIC21.61■■□□□ 1.05
SHMT2P34897 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHMT2P34897 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.61■■□□□ 1.05
SHMT2P34897 AC024257.2-201ENST00000549699 147 ntBASIC21.61■■□□□ 1.05
SHMT2P34897 AC133561.4-201ENST00000566112 224 ntBASIC21.61■■□□□ 1.05
SHMT2P34897 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
SHMT2P34897 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
SHMT2P34897 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHMT2P34897 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHMT2P34897 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SHMT2P34897 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHMT2P34897 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHMT2P34897 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.6■■□□□ 1.05
SHMT2P34897 ANOS2P-203ENST00000472227 1816 ntBASIC21.6■■□□□ 1.05
SHMT2P34897 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.6■■□□□ 1.05
SHMT2P34897 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.6■■□□□ 1.05
SHMT2P34897 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.6■■□□□ 1.05
SHMT2P34897 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHMT2P34897 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHMT2P34897 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
SHMT2P34897 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHMT2P34897 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHMT2P34897 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.59■■□□□ 1.05
SHMT2P34897 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHMT2P34897 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.59■■□□□ 1.05
SHMT2P34897 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHMT2P34897 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHMT2P34897 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHMT2P34897 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SHMT2P34897 PTMA-205ENST00000410064 814 ntTSL 2 BASIC21.59■■□□□ 1.05
SHMT2P34897 AL499627.2-201ENST00000606283 725 ntBASIC21.59■■□□□ 1.05
SHMT2P34897 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.59■■□□□ 1.05
SHMT2P34897 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC21.59■■□□□ 1.05
SHMT2P34897 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
SHMT2P34897 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.59■■□□□ 1.05
SHMT2P34897 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHMT2P34897 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.58■■□□□ 1.05
SHMT2P34897 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SHMT2P34897 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC21.58■■□□□ 1.05
SHMT2P34897 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.58■■□□□ 1.05
SHMT2P34897 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.58■■□□□ 1.05
SHMT2P34897 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SHMT2P34897 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SHMT2P34897 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms