Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC25.58■■□□□ 1.69
SMARCA1P28370 SLC47A1P1-202ENST00000449666 945 ntBASIC25.58■■□□□ 1.69
SMARCA1P28370 AC091305.1-201ENST00000479476 895 ntBASIC25.58■■□□□ 1.69
SMARCA1P28370 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC25.58■■□□□ 1.69
SMARCA1P28370 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC25.58■■□□□ 1.69
SMARCA1P28370 AF213884.3-201ENST00000563833 479 ntBASIC25.58■■□□□ 1.69
SMARCA1P28370 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
SMARCA1P28370 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC25.58■■□□□ 1.69
SMARCA1P28370 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
SMARCA1P28370 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC25.57■■□□□ 1.68
SMARCA1P28370 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SMARCA1P28370 AC142381.2-201ENST00000566120 298 ntBASIC25.57■■□□□ 1.68
SMARCA1P28370 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC25.57■■□□□ 1.68
SMARCA1P28370 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
SMARCA1P28370 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
SMARCA1P28370 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC25.57■■□□□ 1.68
SMARCA1P28370 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
SMARCA1P28370 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC25.57■■□□□ 1.68
SMARCA1P28370 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC25.56■■□□□ 1.68
SMARCA1P28370 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC25.56■■□□□ 1.68
SMARCA1P28370 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
SMARCA1P28370 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
SMARCA1P28370 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC25.56■■□□□ 1.68
SMARCA1P28370 GCA-201ENST00000233612 1694 ntTSL 2 BASIC25.56■■□□□ 1.68
SMARCA1P28370 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
SMARCA1P28370 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SMARCA1P28370 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC25.56■■□□□ 1.68
SMARCA1P28370 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC25.56■■□□□ 1.68
SMARCA1P28370 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.68
SMARCA1P28370 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC25.56■■□□□ 1.68
SMARCA1P28370 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC25.56■■□□□ 1.68
SMARCA1P28370 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SMARCA1P28370 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SMARCA1P28370 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC25.55■■□□□ 1.68
SMARCA1P28370 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
SMARCA1P28370 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC25.55■■□□□ 1.68
SMARCA1P28370 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC25.55■■□□□ 1.68
SMARCA1P28370 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SMARCA1P28370 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC25.55■■□□□ 1.68
SMARCA1P28370 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC25.55■■□□□ 1.68
SMARCA1P28370 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC25.55■■□□□ 1.68
SMARCA1P28370 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC25.55■■□□□ 1.68
SMARCA1P28370 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC25.55■■□□□ 1.68
SMARCA1P28370 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SMARCA1P28370 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC25.54■■□□□ 1.68
SMARCA1P28370 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SMARCA1P28370 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
SMARCA1P28370 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SMARCA1P28370 AP005435.1-201ENST00000529293 1178 ntBASIC25.54■■□□□ 1.68
SMARCA1P28370 AC010525.1-201ENST00000585559 441 ntBASIC25.54■■□□□ 1.68
SMARCA1P28370 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC25.54■■□□□ 1.68
SMARCA1P28370 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC25.54■■□□□ 1.68
SMARCA1P28370 AC008764.7-201ENST00000593779 1081 ntBASIC25.54■■□□□ 1.68
SMARCA1P28370 MAG-206ENST00000597035 542 ntTSL 4 BASIC25.54■■□□□ 1.68
SMARCA1P28370 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC25.54■■□□□ 1.68
SMARCA1P28370 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC25.53■■□□□ 1.68
SMARCA1P28370 AC099791.1-201ENST00000416440 715 ntBASIC25.53■■□□□ 1.68
SMARCA1P28370 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SMARCA1P28370 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
SMARCA1P28370 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
SMARCA1P28370 AL031602.1-201ENST00000633169 911 ntBASIC25.53■■□□□ 1.68
SMARCA1P28370 AC068587.7-201ENST00000641602 218 ntBASIC25.53■■□□□ 1.68
SMARCA1P28370 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
SMARCA1P28370 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
SMARCA1P28370 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC25.52■■□□□ 1.68
SMARCA1P28370 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SMARCA1P28370 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
SMARCA1P28370 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC25.52■■□□□ 1.68
SMARCA1P28370 CA15P2-201ENST00000611168 834 ntBASIC25.52■■□□□ 1.68
SMARCA1P28370 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC25.52■■□□□ 1.68
SMARCA1P28370 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
SMARCA1P28370 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SMARCA1P28370 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
SMARCA1P28370 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC25.52■■□□□ 1.68
SMARCA1P28370 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC25.52■■□□□ 1.68
SMARCA1P28370 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SMARCA1P28370 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC25.51■■□□□ 1.67
SMARCA1P28370 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SMARCA1P28370 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
SMARCA1P28370 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC25.51■■□□□ 1.67
SMARCA1P28370 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SMARCA1P28370 EBPL-204ENST00000378272 766 ntTSL 3 BASIC25.51■■□□□ 1.67
SMARCA1P28370 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC25.51■■□□□ 1.67
SMARCA1P28370 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC25.51■■□□□ 1.67
SMARCA1P28370 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC25.51■■□□□ 1.67
SMARCA1P28370 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
SMARCA1P28370 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC25.51■■□□□ 1.67
SMARCA1P28370 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC25.51■■□□□ 1.67
SMARCA1P28370 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
SMARCA1P28370 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SMARCA1P28370 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC25.5■■□□□ 1.67
SMARCA1P28370 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC25.5■■□□□ 1.67
SMARCA1P28370 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC25.5■■□□□ 1.67
SMARCA1P28370 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
SMARCA1P28370 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC25.49■■□□□ 1.67
SMARCA1P28370 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
SMARCA1P28370 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC25.49■■□□□ 1.67
SMARCA1P28370 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC25.49■■□□□ 1.67
SMARCA1P28370 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC25.49■■□□□ 1.67
SMARCA1P28370 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms