Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.55■■□□□ 1.04
COL5A1P20908 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.55■■□□□ 1.04
COL5A1P20908 AC144652.1-201ENST00000609974 1624 ntBASIC21.55■■□□□ 1.04
COL5A1P20908 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL5A1P20908 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.55■■□□□ 1.04
COL5A1P20908 AC073111.5-205ENST00000641717 521 ntBASIC21.55■■□□□ 1.04
COL5A1P20908 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.55■■□□□ 1.04
COL5A1P20908 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.55■■□□□ 1.04
COL5A1P20908 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL5A1P20908 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.55■■□□□ 1.04
COL5A1P20908 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL5A1P20908 AC137761.2-201ENST00000561729 223 ntBASIC21.55■■□□□ 1.04
COL5A1P20908 AC145350.3-201ENST00000569033 163 ntBASIC21.55■■□□□ 1.04
COL5A1P20908 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.55■■□□□ 1.04
COL5A1P20908 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL5A1P20908 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL5A1P20908 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL5A1P20908 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
COL5A1P20908 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL5A1P20908 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.54■■□□□ 1.04
COL5A1P20908 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.54■■□□□ 1.04
COL5A1P20908 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.54■■□□□ 1.04
COL5A1P20908 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.54■■□□□ 1.04
COL5A1P20908 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC21.54■■□□□ 1.04
COL5A1P20908 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.54■■□□□ 1.04
COL5A1P20908 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL5A1P20908 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
COL5A1P20908 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL5A1P20908 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL5A1P20908 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
COL5A1P20908 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL5A1P20908 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL5A1P20908 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL5A1P20908 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC21.53■■□□□ 1.04
COL5A1P20908 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.53■■□□□ 1.04
COL5A1P20908 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.53■■□□□ 1.04
COL5A1P20908 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL5A1P20908 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL5A1P20908 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.53■■□□□ 1.04
COL5A1P20908 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
COL5A1P20908 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.52■■□□□ 1.04
COL5A1P20908 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL5A1P20908 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL5A1P20908 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL5A1P20908 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
COL5A1P20908 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL5A1P20908 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC21.51■■□□□ 1.03
COL5A1P20908 EMC9-206ENST00000560403 872 ntTSL 2 BASIC21.51■■□□□ 1.03
COL5A1P20908 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.51■■□□□ 1.03
COL5A1P20908 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.51■■□□□ 1.03
COL5A1P20908 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL5A1P20908 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.51■■□□□ 1.03
COL5A1P20908 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.5■■□□□ 1.03
COL5A1P20908 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL5A1P20908 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL5A1P20908 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC21.5■■□□□ 1.03
COL5A1P20908 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.5■■□□□ 1.03
COL5A1P20908 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC21.5■■□□□ 1.03
COL5A1P20908 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.5■■□□□ 1.03
COL5A1P20908 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC21.5■■□□□ 1.03
COL5A1P20908 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL5A1P20908 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL5A1P20908 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL5A1P20908 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.5■■□□□ 1.03
COL5A1P20908 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL5A1P20908 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
COL5A1P20908 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.49■■□□□ 1.03
COL5A1P20908 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL5A1P20908 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL5A1P20908 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL5A1P20908 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL5A1P20908 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL5A1P20908 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
COL5A1P20908 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL5A1P20908 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.49■■□□□ 1.03
COL5A1P20908 CDCA4P2-201ENST00000441182 718 ntBASIC21.49■■□□□ 1.03
COL5A1P20908 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.49■■□□□ 1.03
COL5A1P20908 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.49■■□□□ 1.03
COL5A1P20908 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.49■■□□□ 1.03
COL5A1P20908 AC080038.1-201ENST00000611274 1154 ntBASIC21.49■■□□□ 1.03
COL5A1P20908 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL5A1P20908 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL5A1P20908 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL5A1P20908 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL5A1P20908 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL5A1P20908 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL5A1P20908 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL5A1P20908 AC026185.1-201ENST00000445748 174 ntBASIC21.48■■□□□ 1.03
COL5A1P20908 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.48■■□□□ 1.03
COL5A1P20908 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.48■■□□□ 1.03
COL5A1P20908 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL5A1P20908 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.48■■□□□ 1.03
COL5A1P20908 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL5A1P20908 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC21.48■■□□□ 1.03
COL5A1P20908 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL5A1P20908 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.48■■□□□ 1.03
COL5A1P20908 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.47■■□□□ 1.03
COL5A1P20908 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.47■■□□□ 1.03
COL5A1P20908 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.47■■□□□ 1.03
COL5A1P20908 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms