Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC22.01■■□□□ 1.11
MSH3P20585 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH3P20585 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH3P20585 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
MSH3P20585 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC22.01■■□□□ 1.11
MSH3P20585 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
MSH3P20585 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH3P20585 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH3P20585 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC22■■□□□ 1.11
MSH3P20585 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC22■■□□□ 1.11
MSH3P20585 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
MSH3P20585 PTCHD3P2-201ENST00000424937 1205 ntBASIC22■■□□□ 1.11
MSH3P20585 AC096631.2-201ENST00000436136 790 ntBASIC22■■□□□ 1.11
MSH3P20585 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC22■■□□□ 1.11
MSH3P20585 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC22■■□□□ 1.11
MSH3P20585 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
MSH3P20585 DUSP8P3-201ENST00000399571 1760 ntBASIC21.99■■□□□ 1.11
MSH3P20585 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
MSH3P20585 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH3P20585 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.99■■□□□ 1.11
MSH3P20585 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH3P20585 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH3P20585 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH3P20585 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.99■■□□□ 1.11
MSH3P20585 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH3P20585 UNC93B3-201ENST00000308076 687 ntBASIC21.99■■□□□ 1.11
MSH3P20585 SERBP1P1-201ENST00000396021 1160 ntBASIC21.99■■□□□ 1.11
MSH3P20585 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH3P20585 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
MSH3P20585 MIR3181-201ENST00000578512 73 ntBASIC21.99■■□□□ 1.11
MSH3P20585 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.99■■□□□ 1.11
MSH3P20585 SF1-220ENST00000626028 704 ntTSL 2 BASIC21.99■■□□□ 1.11
MSH3P20585 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.99■■□□□ 1.11
MSH3P20585 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.99■■□□□ 1.11
MSH3P20585 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH3P20585 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.99■■□□□ 1.11
MSH3P20585 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH3P20585 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
MSH3P20585 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH3P20585 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.98■■□□□ 1.11
MSH3P20585 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.98■■□□□ 1.11
MSH3P20585 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.97■■□□□ 1.11
MSH3P20585 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
MSH3P20585 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.97■■□□□ 1.11
MSH3P20585 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.97■■□□□ 1.11
MSH3P20585 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.97■■□□□ 1.11
MSH3P20585 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC21.97■■□□□ 1.11
MSH3P20585 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.97■■□□□ 1.11
MSH3P20585 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH3P20585 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC21.97■■□□□ 1.11
MSH3P20585 AL499627.2-201ENST00000606283 725 ntBASIC21.97■■□□□ 1.11
MSH3P20585 AL138724.1-201ENST00000606771 1088 ntBASIC21.97■■□□□ 1.11
MSH3P20585 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC21.97■■□□□ 1.11
MSH3P20585 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH3P20585 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH3P20585 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH3P20585 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH3P20585 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
MSH3P20585 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.96■■□□□ 1.11
MSH3P20585 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH3P20585 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
MSH3P20585 AL136162.1-201ENST00000607711 1078 ntBASIC21.96■■□□□ 1.11
MSH3P20585 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH3P20585 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH3P20585 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.95■■□□□ 1.1
MSH3P20585 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
MSH3P20585 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.95■■□□□ 1.1
MSH3P20585 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
MSH3P20585 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.95■■□□□ 1.1
MSH3P20585 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
MSH3P20585 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
MSH3P20585 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
MSH3P20585 HES6-206ENST00000409574 738 ntTSL 2 BASIC21.95■■□□□ 1.1
MSH3P20585 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC21.95■■□□□ 1.1
MSH3P20585 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
MSH3P20585 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
MSH3P20585 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
MSH3P20585 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
MSH3P20585 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
MSH3P20585 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
MSH3P20585 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
MSH3P20585 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
MSH3P20585 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
MSH3P20585 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
MSH3P20585 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
MSH3P20585 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
MSH3P20585 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
MSH3P20585 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
MSH3P20585 AC133637.1-201ENST00000624115 1537 ntBASIC21.94■■□□□ 1.1
MSH3P20585 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.94■■□□□ 1.1
MSH3P20585 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
MSH3P20585 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
MSH3P20585 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
MSH3P20585 AC011298.3-201ENST00000615796 283 ntBASIC21.93■■□□□ 1.1
MSH3P20585 RALB-208ENST00000631312 311 ntTSL 5 BASIC21.93■■□□□ 1.1
MSH3P20585 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
MSH3P20585 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
MSH3P20585 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH3P20585 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.92■■□□□ 1.1
MSH3P20585 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms