Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC17.16■□□□□ 0.34
CXCL1P09341 H19-210ENST00000439725 1929 ntTSL 2 BASIC17.15■□□□□ 0.34
CXCL1P09341 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC17.15■□□□□ 0.34
CXCL1P09341 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.15■□□□□ 0.34
CXCL1P09341 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CXCL1P09341 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CXCL1P09341 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CXCL1P09341 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CXCL1P09341 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.15■□□□□ 0.34
CXCL1P09341 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC17.15■□□□□ 0.34
CXCL1P09341 AL157400.5-201ENST00000507624 621 ntBASIC17.15■□□□□ 0.34
CXCL1P09341 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC17.15■□□□□ 0.34
CXCL1P09341 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CXCL1P09341 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CXCL1P09341 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL1P09341 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL1P09341 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL1P09341 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL1P09341 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
CXCL1P09341 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL1P09341 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL1P09341 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL1P09341 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL1P09341 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL1P09341 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL1P09341 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CXCL1P09341 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CXCL1P09341 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CXCL1P09341 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CXCL1P09341 CR559946.2-201ENST00000623684 991 ntBASIC17.13■□□□□ 0.33
CXCL1P09341 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CXCL1P09341 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CXCL1P09341 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CXCL1P09341 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CXCL1P09341 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CXCL1P09341 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CXCL1P09341 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.12■□□□□ 0.33
CXCL1P09341 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CXCL1P09341 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC17.12■□□□□ 0.33
CXCL1P09341 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CXCL1P09341 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
CXCL1P09341 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CXCL1P09341 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CXCL1P09341 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC17.12■□□□□ 0.33
CXCL1P09341 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CXCL1P09341 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CXCL1P09341 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CXCL1P09341 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
CXCL1P09341 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CXCL1P09341 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.12■□□□□ 0.33
CXCL1P09341 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
CXCL1P09341 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
CXCL1P09341 AC079630.1-202ENST00000618127 1840 ntBASIC17.12■□□□□ 0.33
CXCL1P09341 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CXCL1P09341 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CXCL1P09341 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC17.12■□□□□ 0.33
CXCL1P09341 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CXCL1P09341 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CXCL1P09341 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CXCL1P09341 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CXCL1P09341 KRT18P10-201ENST00000388836 1287 ntBASIC17.11■□□□□ 0.33
CXCL1P09341 ZNRF2P2-203ENST00000454624 420 ntBASIC17.11■□□□□ 0.33
CXCL1P09341 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC17.11■□□□□ 0.33
CXCL1P09341 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC17.11■□□□□ 0.33
CXCL1P09341 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.11■□□□□ 0.33
CXCL1P09341 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.11■□□□□ 0.33
CXCL1P09341 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CXCL1P09341 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CXCL1P09341 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CXCL1P09341 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CXCL1P09341 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC17.1■□□□□ 0.33
CXCL1P09341 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL1P09341 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL1P09341 RARG-204ENST00000543726 1779 ntTSL 2 BASIC17.1■□□□□ 0.33
CXCL1P09341 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL1P09341 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL1P09341 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL1P09341 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL1P09341 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC17.1■□□□□ 0.33
CXCL1P09341 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC17.1■□□□□ 0.33
CXCL1P09341 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL1P09341 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL1P09341 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL1P09341 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CXCL1P09341 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CXCL1P09341 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CXCL1P09341 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CXCL1P09341 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.09■□□□□ 0.33
CXCL1P09341 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CXCL1P09341 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CXCL1P09341 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CXCL1P09341 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CXCL1P09341 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CXCL1P09341 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC17.09■□□□□ 0.33
CXCL1P09341 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.09■□□□□ 0.33
CXCL1P09341 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
CXCL1P09341 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CXCL1P09341 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CXCL1P09341 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CXCL1P09341 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms