Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SMARCA1P28370 BTNL8-202ENST00000340184 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SMARCA1P28370 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
SMARCA1P28370 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
SMARCA1P28370 ZBTB49-201ENST00000337872 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SMARCA1P28370 RHOH-222ENST00000617441 1872 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
SMARCA1P28370 LINC01679-201ENST00000442815 2798 ntTSL 3 BASIC15.29■□□□□ 0.04
SMARCA1P28370 POTEB3-201ENST00000611217 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SMARCA1P28370 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC15.29■□□□□ 0.04
SMARCA1P28370 SP140L-203ENST00000415673 2665 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
SMARCA1P28370 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC15.29■□□□□ 0.04
SMARCA1P28370 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
SMARCA1P28370 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC15.28■□□□□ 0.04
SMARCA1P28370 GNG4-201ENST00000366597 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 GMPR2-224ENST00000559910 1562 ntTSL 5 BASIC15.28■□□□□ 0.04
SMARCA1P28370 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 AC079781.5-202ENST00000641784 3743 ntBASIC15.28■□□□□ 0.04
SMARCA1P28370 OS9-218ENST00000551035 2246 ntTSL 2 BASIC15.28■□□□□ 0.04
SMARCA1P28370 ANAPC15-203ENST00000502597 1481 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC15.28■□□□□ 0.04
SMARCA1P28370 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC15.28■□□□□ 0.04
SMARCA1P28370 PPP1R26P4-201ENST00000619065 3527 ntBASIC15.28■□□□□ 0.04
SMARCA1P28370 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 RXRG-201ENST00000359842 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 NRG1-211ENST00000520502 1330 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 SULT2A1-201ENST00000222002 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 CCT8-211ENST00000540844 1927 ntTSL 2 BASIC15.28■□□□□ 0.04
SMARCA1P28370 PMM1-201ENST00000216259 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
SMARCA1P28370 GH1-203ENST00000351388 685 ntTSL 2 BASIC15.28■□□□□ 0.04
SMARCA1P28370 TAC4-203ENST00000352793 564 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 RPLP1-202ENST00000357790 445 ntTSL 2 BASIC15.28■□□□□ 0.04
SMARCA1P28370 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC15.28■□□□□ 0.04
SMARCA1P28370 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC15.28■□□□□ 0.04
SMARCA1P28370 HLA-DPA2-205ENST00000433582 733 ntBASIC15.28■□□□□ 0.04
SMARCA1P28370 HLA-W-207ENST00000439514 771 ntBASIC15.28■□□□□ 0.04
SMARCA1P28370 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC15.28■□□□□ 0.04
SMARCA1P28370 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC15.28■□□□□ 0.04
SMARCA1P28370 DUT-207ENST00000559416 635 ntTSL 2 BASIC15.28■□□□□ 0.04
SMARCA1P28370 NFATC2IP-206ENST00000568148 1157 ntTSL 2 BASIC15.28■□□□□ 0.04
SMARCA1P28370 MIR4746-201ENST00000579802 71 ntBASIC15.28■□□□□ 0.04
SMARCA1P28370 AC021146.12-201ENST00000608365 477 ntTSL 2 BASIC15.28■□□□□ 0.04
SMARCA1P28370 HMGB1P24-201ENST00000611897 328 ntBASIC15.28■□□□□ 0.04
SMARCA1P28370 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 ACAD11-204ENST00000481970 1891 ntTSL 5 BASIC15.28■□□□□ 0.04
SMARCA1P28370 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC15.28■□□□□ 0.04
SMARCA1P28370 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
SMARCA1P28370 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC15.28■□□□□ 0.04
SMARCA1P28370 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 LINGO1-AS1-201ENST00000558691 1720 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 CDC20-201ENST00000310955 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 AC060814.4-201ENST00000594169 2163 ntBASIC15.28■□□□□ 0.04
SMARCA1P28370 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
SMARCA1P28370 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
SMARCA1P28370 JAML-211ENST00000533261 1508 ntTSL 5 BASIC15.27■□□□□ 0.04
SMARCA1P28370 LPGAT1-201ENST00000366996 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SMARCA1P28370 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
SMARCA1P28370 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SMARCA1P28370 AC020914.1-201ENST00000396477 1476 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
SMARCA1P28370 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SMARCA1P28370 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
SMARCA1P28370 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SMARCA1P28370 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SMARCA1P28370 SLIRP-201ENST00000238688 394 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.04
SMARCA1P28370 EDDM3B-201ENST00000326783 896 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SMARCA1P28370 BCL2L11-203ENST00000357757 947 ntTSL 5 BASIC15.27■□□□□ 0.04
SMARCA1P28370 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SMARCA1P28370 SERF2-205ENST00000403425 690 ntTSL 2 BASIC15.27■□□□□ 0.04
SMARCA1P28370 PGAM1P11-201ENST00000416729 680 ntBASIC15.27■□□□□ 0.04
SMARCA1P28370 IQCF4-203ENST00000428561 420 ntBASIC15.27■□□□□ 0.04
SMARCA1P28370 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC15.27■□□□□ 0.04
SMARCA1P28370 AC108879.1-201ENST00000438026 828 ntTSL 3 BASIC15.27■□□□□ 0.04
SMARCA1P28370 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC15.27■□□□□ 0.04
SMARCA1P28370 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC15.27■□□□□ 0.04
SMARCA1P28370 SRP19-206ENST00000515463 660 ntTSL 3 BASIC15.27■□□□□ 0.04
SMARCA1P28370 CASP3-205ENST00000517513 964 ntTSL 5 BASIC15.27■□□□□ 0.04
SMARCA1P28370 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC15.27■□□□□ 0.04
SMARCA1P28370 AC099524.1-203ENST00000565272 756 ntTSL 5 BASIC15.27■□□□□ 0.04
SMARCA1P28370 AC109597.2-201ENST00000569407 927 ntTSL 3 BASIC15.27■□□□□ 0.04
SMARCA1P28370 AC123912.6-201ENST00000612657 315 ntBASIC15.27■□□□□ 0.04
SMARCA1P28370 AL162731.1-201ENST00000613248 876 ntTSL 3 BASIC15.27■□□□□ 0.04
SMARCA1P28370 MIR6756-201ENST00000616240 63 ntBASIC15.27■□□□□ 0.04
SMARCA1P28370 BX322534.1-201ENST00000635574 241 ntBASIC15.27■□□□□ 0.04
SMARCA1P28370 AC215524.1-201ENST00000635696 241 ntBASIC15.27■□□□□ 0.04
SMARCA1P28370 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC15.27■□□□□ 0.04
SMARCA1P28370 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC15.27■□□□□ 0.04
SMARCA1P28370 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms