Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 KIR2DL3-201ENST00000342376 1590 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A3P12111 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A3P12111 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A3P12111 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
COL6A3P12111 AC104581.4-201ENST00000623126 3052 ntBASIC13.25□□□□□ -0.29
COL6A3P12111 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A3P12111 ANKS1B-210ENST00000547446 1690 ntTSL 2 BASIC13.25□□□□□ -0.29
COL6A3P12111 SLC25A6P1-201ENST00000412123 775 ntBASIC13.24□□□□□ -0.29
COL6A3P12111 TMEM91-206ENST00000447302 721 ntTSL 2 BASIC13.24□□□□□ -0.29
COL6A3P12111 ARHGAP22-IT1-201ENST00000505718 470 ntTSL 3 BASIC13.24□□□□□ -0.29
COL6A3P12111 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A3P12111 C14orf2-208ENST00000554713 1058 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A3P12111 AC068987.3-201ENST00000637934 1195 ntTSL 5 BASIC13.24□□□□□ -0.29
COL6A3P12111 RBMX2-205ENST00000639890 871 ntTSL 5 BASIC13.24□□□□□ -0.29
COL6A3P12111 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A3P12111 PCDHB6-201ENST00000231136 3266 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
COL6A3P12111 AL132639.2-201ENST00000605298 1359 ntBASIC13.24□□□□□ -0.29
COL6A3P12111 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC13.24□□□□□ -0.29
COL6A3P12111 WRNIP1-201ENST00000380764 1557 ntTSL 2 BASIC13.24□□□□□ -0.29
COL6A3P12111 AC246787.1-201ENST00000392301 627 ntBASIC13.24□□□□□ -0.29
COL6A3P12111 AC008267.2-201ENST00000411606 981 ntBASIC13.24□□□□□ -0.29
COL6A3P12111 NME6-207ENST00000426689 1209 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A3P12111 FAM238B-203ENST00000434458 880 ntTSL 3 BASIC13.24□□□□□ -0.29
COL6A3P12111 RPSAP11-201ENST00000443010 881 ntBASIC13.24□□□□□ -0.29
COL6A3P12111 AC010343.1-201ENST00000467270 629 ntBASIC13.24□□□□□ -0.29
COL6A3P12111 AC091941.1-201ENST00000623003 576 ntBASIC13.24□□□□□ -0.29
COL6A3P12111 ALDOA-229ENST00000636698 420 ntTSL 3 BASIC13.24□□□□□ -0.29
COL6A3P12111 POR-201ENST00000394893 2532 ntTSL 5 BASIC13.24□□□□□ -0.29
COL6A3P12111 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A3P12111 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC13.24□□□□□ -0.29
COL6A3P12111 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A3P12111 NEK11-202ENST00000383366 2914 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A3P12111 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A3P12111 MEOX1-203ENST00000393661 1206 ntTSL 3 BASIC13.24□□□□□ -0.29
COL6A3P12111 DICER1-AS1-201ENST00000435343 723 ntTSL 3 BASIC13.24□□□□□ -0.29
COL6A3P12111 AP001180.5-201ENST00000581948 730 ntBASIC13.24□□□□□ -0.29
COL6A3P12111 SERPINA1-203ENST00000393088 1885 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A3P12111 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A3P12111 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A3P12111 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A3P12111 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A3P12111 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A3P12111 DGCR9-201ENST00000609630 2415 ntBASIC13.23□□□□□ -0.29
COL6A3P12111 CNKSR3-204ENST00000479339 2023 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A3P12111 STK3-218ENST00000617590 2485 ntTSL 5 BASIC13.23□□□□□ -0.29
COL6A3P12111 FHL2-204ENST00000393352 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A3P12111 SHANK2-AS3-201ENST00000307548 1683 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A3P12111 AC113367.3-201ENST00000508316 1912 ntBASIC13.23□□□□□ -0.29
COL6A3P12111 LINC01532-202ENST00000591143 1948 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A3P12111 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC13.23□□□□□ -0.29
COL6A3P12111 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC13.23□□□□□ -0.29
COL6A3P12111 HIST1H1E-201ENST00000304218 754 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
COL6A3P12111 MLIP-202ENST00000370876 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A3P12111 PRAC2-201ENST00000422730 577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A3P12111 CCT6P1-203ENST00000443108 1170 ntTSL 2 BASIC13.23□□□□□ -0.29
COL6A3P12111 RN7SL709P-201ENST00000478855 300 ntBASIC13.23□□□□□ -0.29
COL6A3P12111 RAB30-203ENST00000525117 937 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A3P12111 TMEM208-210ENST00000565201 832 ntTSL 2 BASIC13.23□□□□□ -0.29
COL6A3P12111 AL160291.1-201ENST00000574842 1002 ntTSL 2 BASIC13.23□□□□□ -0.29
COL6A3P12111 ECSCR-201ENST00000618155 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A3P12111 AL359736.3-201ENST00000626707 303 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
COL6A3P12111 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
COL6A3P12111 DNASE1L3-207ENST00000486455 1321 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
COL6A3P12111 AC000120.1-201ENST00000414227 1589 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A3P12111 AP001046.1-201ENST00000435702 2816 ntTSL 2 BASIC13.23□□□□□ -0.29
COL6A3P12111 AC078850.1-201ENST00000514265 1623 ntTSL 2 BASIC13.23□□□□□ -0.29
COL6A3P12111 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
COL6A3P12111 KNSTRN-203ENST00000448395 1464 ntTSL 2 BASIC13.23□□□□□ -0.29
COL6A3P12111 SNX18-202ENST00000343017 3140 ntBASIC13.23□□□□□ -0.29
COL6A3P12111 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
COL6A3P12111 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
COL6A3P12111 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
COL6A3P12111 SF3B6-201ENST00000233468 770 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A3P12111 AGA-201ENST00000264595 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A3P12111 KRT18P12-201ENST00000425245 1273 ntBASIC13.23□□□□□ -0.29
COL6A3P12111 PIGQP1-201ENST00000426300 430 ntBASIC13.23□□□□□ -0.29
COL6A3P12111 AL669970.2-201ENST00000446184 280 ntTSL 3 BASIC13.23□□□□□ -0.29
COL6A3P12111 RN7SL398P-201ENST00000470244 298 ntBASIC13.23□□□□□ -0.29
COL6A3P12111 RPSAP4-201ENST00000488229 888 ntBASIC13.23□□□□□ -0.29
COL6A3P12111 AC209005.1-201ENST00000514043 464 ntTSL 3 BASIC13.23□□□□□ -0.29
COL6A3P12111 AC034102.3-201ENST00000551846 300 ntTSL 3 BASIC13.23□□□□□ -0.29
COL6A3P12111 HKR1-206ENST00000586897 510 ntTSL 4 BASIC13.23□□□□□ -0.29
COL6A3P12111 AC016590.1-203ENST00000590889 547 ntTSL 2 BASIC13.23□□□□□ -0.29
COL6A3P12111 AL117335.1-201ENST00000620919 678 ntTSL 3 BASIC13.23□□□□□ -0.29
COL6A3P12111 KRTAP4-7-202ENST00000621138 423 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
COL6A3P12111 LINC01669-203ENST00000624105 505 ntTSL 5 BASIC13.23□□□□□ -0.29
COL6A3P12111 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A3P12111 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A3P12111 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC13.23□□□□□ -0.29
COL6A3P12111 PES1P1-201ENST00000508165 1736 ntBASIC13.23□□□□□ -0.29
COL6A3P12111 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A3P12111 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13.22□□□□□ -0.29
COL6A3P12111 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC13.22□□□□□ -0.29
COL6A3P12111 ZNF555-203ENST00000591539 2270 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
COL6A3P12111 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A3P12111 LINC01442-202ENST00000618872 1600 ntTSL 2 BASIC13.22□□□□□ -0.29
COL6A3P12111 C14orf159-202ENST00000298858 642 ntTSL 5 BASIC13.22□□□□□ -0.29
COL6A3P12111 GALM-202ENST00000410063 1023 ntTSL 3 BASIC13.22□□□□□ -0.29
COL6A3P12111 MRPS22-202ENST00000465056 1099 ntAPPRIS ALT1 TSL 5 BASIC13.22□□□□□ -0.29
COL6A3P12111 AC022364.1-201ENST00000473753 739 ntTSL 5 BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms