Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
HOXA3O43365 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
HOXA3O43365 DOT1L-201ENST00000398665 7436 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
HOXA3O43365 MEX3B-202ENST00000558133 4333 ntBASIC10.87□□□□□ -0.67
HOXA3O43365 PPP1R15B-201ENST00000367188 5227 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
HOXA3O43365 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
HOXA3O43365 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
HOXA3O43365 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC10.87□□□□□ -0.67
HOXA3O43365 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC10.87□□□□□ -0.67
HOXA3O43365 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 TP73-203ENST00000357733 4899 ntTSL 5 BASIC10.86□□□□□ -0.67
HOXA3O43365 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC10.86□□□□□ -0.67
HOXA3O43365 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 AC020931.1-201ENST00000589622 1346 ntBASIC10.86□□□□□ -0.67
HOXA3O43365 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC10.86□□□□□ -0.67
HOXA3O43365 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
HOXA3O43365 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 UNC13B-202ENST00000378496 5063 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 WAPL-206ENST00000618527 6152 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
HOXA3O43365 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 AL357143.1-202ENST00000640531 5777 ntTSL 5 BASIC10.86□□□□□ -0.67
HOXA3O43365 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 FAM213A-204ENST00000372188 829 ntAPPRIS P1 TSL 2 BASIC10.86□□□□□ -0.67
HOXA3O43365 REG3G-202ENST00000393897 856 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 SNHG14-201ENST00000414175 610 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC10.86□□□□□ -0.67
HOXA3O43365 AL137244.1-201ENST00000422931 865 ntBASIC10.86□□□□□ -0.67
HOXA3O43365 AC010086.2-201ENST00000428616 226 ntBASIC10.86□□□□□ -0.67
HOXA3O43365 ZNF877P-201ENST00000437614 612 ntBASIC10.86□□□□□ -0.67
HOXA3O43365 RPSAP69-201ENST00000445739 546 ntTSL 4 BASIC10.86□□□□□ -0.67
HOXA3O43365 AC098820.2-201ENST00000457694 666 ntTSL 5 BASIC10.86□□□□□ -0.67
HOXA3O43365 RPL29P2-201ENST00000488409 460 ntBASIC10.86□□□□□ -0.67
HOXA3O43365 TNC-212ENST00000542877 5517 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 LINC00677-201ENST00000558224 486 ntTSL 3 BASIC10.86□□□□□ -0.67
HOXA3O43365 AC027139.1-201ENST00000565286 951 ntBASIC10.86□□□□□ -0.67
HOXA3O43365 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC10.86□□□□□ -0.67
HOXA3O43365 TNFRSF10A-204ENST00000613472 978 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC10.86□□□□□ -0.67
HOXA3O43365 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC10.86□□□□□ -0.67
HOXA3O43365 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC10.86□□□□□ -0.67
HOXA3O43365 BX322534.1-201ENST00000635574 241 ntBASIC10.86□□□□□ -0.67
HOXA3O43365 AC215524.1-201ENST00000635696 241 ntBASIC10.86□□□□□ -0.67
HOXA3O43365 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC10.86□□□□□ -0.67
HOXA3O43365 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC10.86□□□□□ -0.67
HOXA3O43365 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 LRRC8A-203ENST00000372600 4355 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 ARPIN-201ENST00000357484 7591 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC10.86□□□□□ -0.67
HOXA3O43365 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
HOXA3O43365 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
HOXA3O43365 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC10.86□□□□□ -0.67
HOXA3O43365 TRAK1-210ENST00000613405 4672 ntTSL 2 BASIC10.86□□□□□ -0.67
HOXA3O43365 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC10.86□□□□□ -0.67
HOXA3O43365 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC10.86□□□□□ -0.67
HOXA3O43365 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 AC024075.2-201ENST00000598112 1473 ntBASIC10.86□□□□□ -0.67
HOXA3O43365 CELSR3-201ENST00000164024 11956 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 MON1B-201ENST00000248248 6091 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 VAPB-202ENST00000395802 1834 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
HOXA3O43365 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC10.85□□□□□ -0.67
HOXA3O43365 SH3PXD2A-203ENST00000369774 11468 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
HOXA3O43365 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
HOXA3O43365 AC111170.3-201ENST00000624282 2464 ntBASIC10.85□□□□□ -0.67
HOXA3O43365 C15orf39-202ENST00000394987 4430 ntAPPRIS P2 TSL 1 (best) BASIC10.85□□□□□ -0.67
HOXA3O43365 MAP4K2-201ENST00000294066 7178 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
HOXA3O43365 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
HOXA3O43365 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC10.85□□□□□ -0.67
HOXA3O43365 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC10.85□□□□□ -0.67
HOXA3O43365 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
HOXA3O43365 UCP2-202ENST00000536983 1413 ntTSL 5 BASIC10.85□□□□□ -0.67
HOXA3O43365 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
HOXA3O43365 AC073869.1-201ENST00000415574 2762 ntBASIC10.85□□□□□ -0.67
HOXA3O43365 LINC00967-203ENST00000518035 1502 ntTSL 2 BASIC10.85□□□□□ -0.67
HOXA3O43365 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC10.85□□□□□ -0.67
HOXA3O43365 KREMEN1-202ENST00000400335 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
HOXA3O43365 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
HOXA3O43365 SULF1-202ENST00000402687 4891 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
HOXA3O43365 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC10.85□□□□□ -0.67
HOXA3O43365 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC10.85□□□□□ -0.67
HOXA3O43365 OR2T8-201ENST00000319968 939 ntAPPRIS P1 BASIC10.85□□□□□ -0.67
HOXA3O43365 CCL19-202ENST00000378800 414 ntTSL 2 BASIC10.85□□□□□ -0.67
HOXA3O43365 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC10.85□□□□□ -0.67
HOXA3O43365 PGK1P2-201ENST00000431702 1214 ntBASIC10.85□□□□□ -0.67
HOXA3O43365 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC10.85□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms