Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 Z98259.1-201ENST00000564261 1697 ntBASIC15.79■□□□□ 0.12
HLA-DOAP06340 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.79■□□□□ 0.12
HLA-DOAP06340 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DOAP06340 PDXDC1-218ENST00000627450 2683 ntTSL 2 BASIC15.79■□□□□ 0.12
HLA-DOAP06340 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DOAP06340 AC126335.2-201ENST00000623362 4637 ntBASIC15.79■□□□□ 0.12
HLA-DOAP06340 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC15.78■□□□□ 0.12
HLA-DOAP06340 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DOAP06340 NDUFA10-201ENST00000252711 4915 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DOAP06340 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DOAP06340 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.78■□□□□ 0.12
HLA-DOAP06340 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DOAP06340 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DOAP06340 MPZL3-204ENST00000527472 1381 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DOAP06340 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DOAP06340 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DOAP06340 LINC00846-201ENST00000334165 1778 ntTSL 2 BASIC15.78■□□□□ 0.12
HLA-DOAP06340 AC135506.1-201ENST00000603877 1799 ntBASIC15.78■□□□□ 0.12
HLA-DOAP06340 ENPP7P8-202ENST00000527856 1345 ntBASIC15.78■□□□□ 0.12
HLA-DOAP06340 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DOAP06340 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DOAP06340 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DOAP06340 USMG5-205ENST00000369825 789 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
HLA-DOAP06340 FOLR1-204ENST00000393681 1061 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DOAP06340 POLR2F-202ENST00000405557 560 ntTSL 5 BASIC15.78■□□□□ 0.12
HLA-DOAP06340 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC15.78■□□□□ 0.12
HLA-DOAP06340 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC15.78■□□□□ 0.12
HLA-DOAP06340 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DOAP06340 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC15.78■□□□□ 0.12
HLA-DOAP06340 BICD1P1-201ENST00000457832 1222 ntBASIC15.78■□□□□ 0.12
HLA-DOAP06340 GYG1-209ENST00000483267 801 ntTSL 2 BASIC15.78■□□□□ 0.12
HLA-DOAP06340 AC099328.1-201ENST00000498809 1030 ntBASIC15.78■□□□□ 0.12
HLA-DOAP06340 HNRNPA1P4-201ENST00000509706 756 ntBASIC15.78■□□□□ 0.12
HLA-DOAP06340 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC15.78■□□□□ 0.12
HLA-DOAP06340 AC025259.1-201ENST00000550301 647 ntTSL 3 BASIC15.78■□□□□ 0.12
HLA-DOAP06340 AC006262.2-202ENST00000600152 333 ntTSL 2 BASIC15.78■□□□□ 0.12
HLA-DOAP06340 POLR2F-213ENST00000606538 760 ntTSL 2 BASIC15.78■□□□□ 0.12
HLA-DOAP06340 MFSD12-215ENST00000615613 688 ntBASIC15.78■□□□□ 0.12
HLA-DOAP06340 AC005609.5-201ENST00000624712 1053 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DOAP06340 FRG2EP-201ENST00000634243 835 ntBASIC15.78■□□□□ 0.12
HLA-DOAP06340 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DOAP06340 OLAH-203ENST00000378228 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DOAP06340 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC15.78■□□□□ 0.12
HLA-DOAP06340 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DOAP06340 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DOAP06340 CACNA2D2-205ENST00000429770 5304 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
HLA-DOAP06340 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC15.78■□□□□ 0.12
HLA-DOAP06340 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DOAP06340 AGAP12P-201ENST00000585227 2359 ntBASIC15.78■□□□□ 0.12
HLA-DOAP06340 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DOAP06340 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.78■□□□□ 0.12
HLA-DOAP06340 PLEKHA7-202ENST00000355661 4980 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DOAP06340 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DOAP06340 NDUFAF6-201ENST00000396111 1869 ntTSL 5 BASIC15.78■□□□□ 0.12
HLA-DOAP06340 IWS1-201ENST00000295321 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DOAP06340 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC15.78■□□□□ 0.12
HLA-DOAP06340 PLEKHG6-202ENST00000304581 1424 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DOAP06340 ZFAND1-201ENST00000220669 1798 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DOAP06340 ZFAND1-221ENST00000523096 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DOAP06340 GDAP2-201ENST00000369442 2436 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DOAP06340 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DOAP06340 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC15.77■□□□□ 0.12
HLA-DOAP06340 TESPA1-202ENST00000449076 2010 ntAPPRIS P3 TSL 2 BASIC15.77■□□□□ 0.12
HLA-DOAP06340 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DOAP06340 TFG-208ENST00000490574 1696 ntAPPRIS P3 TSL 3 BASIC15.77■□□□□ 0.12
HLA-DOAP06340 AL391097.1-201ENST00000432706 1620 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DOAP06340 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
HLA-DOAP06340 MYL3-201ENST00000292327 924 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DOAP06340 GAST-201ENST00000329402 470 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DOAP06340 SCGB1C1-201ENST00000342878 431 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DOAP06340 ULBP3-201ENST00000367339 988 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
HLA-DOAP06340 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DOAP06340 HDHD5-AS1-202ENST00000431923 616 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DOAP06340 PRDM2-213ENST00000503842 705 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DOAP06340 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC15.77■□□□□ 0.12
HLA-DOAP06340 PRDX2P3-201ENST00000515779 586 ntBASIC15.77■□□□□ 0.12
HLA-DOAP06340 AC099524.1-203ENST00000565272 756 ntTSL 5 BASIC15.77■□□□□ 0.12
HLA-DOAP06340 AC012146.4-201ENST00000575546 271 ntBASIC15.77■□□□□ 0.12
HLA-DOAP06340 RN7SL480P-201ENST00000581481 294 ntBASIC15.77■□□□□ 0.12
HLA-DOAP06340 AC025048.4-201ENST00000589740 699 ntTSL 3 BASIC15.77■□□□□ 0.12
HLA-DOAP06340 ECSIT-211ENST00000592312 1286 ntTSL 5 BASIC15.77■□□□□ 0.12
HLA-DOAP06340 C2orf27AP1-201ENST00000618128 586 ntBASIC15.77■□□□□ 0.12
HLA-DOAP06340 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DOAP06340 PSMC5-201ENST00000310144 1579 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HLA-DOAP06340 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
HLA-DOAP06340 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
HLA-DOAP06340 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
HLA-DOAP06340 AC004623.1-201ENST00000624592 2127 ntBASIC15.77■□□□□ 0.11
HLA-DOAP06340 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
HLA-DOAP06340 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HLA-DOAP06340 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
HLA-DOAP06340 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HLA-DOAP06340 AP000787.1-205ENST00000536683 1485 ntTSL 5 BASIC15.77■□□□□ 0.11
HLA-DOAP06340 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HLA-DOAP06340 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC15.77■□□□□ 0.11
HLA-DOAP06340 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HLA-DOAP06340 GRK6P1-201ENST00000400595 1711 ntBASIC15.77■□□□□ 0.11
HLA-DOAP06340 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
HLA-DOAP06340 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HLA-DOAP06340 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms