Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 CLCNKB-202ENST00000375679 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 TCEAL5-201ENST00000372680 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 BCAS2P2-201ENST00000425064 674 ntBASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 ALG1L3P-201ENST00000503331 765 ntBASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 FAM213AP2-201ENST00000521579 683 ntBASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 AL137779.3-201ENST00000553295 729 ntBASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 FOXN3-AS2-201ENST00000554071 1262 ntBASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 MT2A-202ENST00000561491 581 ntTSL 2 BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 THY1-209ENST00000580275 578 ntTSL 3 BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 C1QTNF6-201ENST00000337843 2934 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 TNFRSF8-201ENST00000263932 3686 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 PICART1-201ENST00000499842 2533 ntTSL 2 BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 RGS6-202ENST00000355512 1564 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 DRD3-204ENST00000467632 1554 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 AIFM1P1-201ENST00000413342 1841 ntBASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 HOPX-202ENST00000337881 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 AC006144.1-201ENST00000424220 1600 ntBASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 EPB42-202ENST00000441366 2374 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 CCDC3-202ENST00000378839 3180 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SHROOM3Q8TF72 SECISBP2-201ENST00000339901 3320 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 CEP83-208ENST00000547575 3122 ntTSL 2 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 CANX-202ENST00000452673 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 AL021155.1-201ENST00000438808 2637 ntBASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 SIRT2-201ENST00000249396 2070 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 SIRT2-204ENST00000392081 2062 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 PSAT1P2-201ENST00000426107 972 ntBASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 KRT18P37-201ENST00000520711 1282 ntBASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 AC008972.2-201ENST00000606587 494 ntBASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 AL590094.1-208ENST00000636917 627 ntTSL 5 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 AADACL4-201ENST00000376221 1575 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 ACAD11-204ENST00000481970 1891 ntTSL 5 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 RABGEF1-210ENST00000437078 4319 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 CDC45-201ENST00000263201 1976 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 DLGAP3-202ENST00000373347 3856 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 ACKR1-202ENST00000368122 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 RET-205ENST00000615310 4337 ntTSL 5 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 GHITM-201ENST00000372134 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 ZCRB1-201ENST00000266529 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 TRMT10B-203ENST00000377754 1881 ntTSL 2 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 MRPS16-202ENST00000372945 2634 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 CYB561D1-206ENST00000496961 3424 ntTSL 2 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 LMBRD2-201ENST00000296603 8185 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 PAEP-201ENST00000277508 821 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 C3orf35-206ENST00000452017 513 ntAPPRIS P5 TSL 5 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 PACRG-AS3-203ENST00000614038 1246 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 AC126755.5-201ENST00000622756 267 ntBASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 CR392039.1-201ENST00000623217 204 ntBASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC13.69□□□□□ -0.22
SHROOM3Q8TF72 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
SHROOM3Q8TF72 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
SHROOM3Q8TF72 FOSB-203ENST00000443841 3346 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SHROOM3Q8TF72 AL645937.6-201ENST00000641122 3727 ntBASIC13.68□□□□□ -0.22
SHROOM3Q8TF72 AC064850.1-201ENST00000413279 1398 ntBASIC13.68□□□□□ -0.22
SHROOM3Q8TF72 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SHROOM3Q8TF72 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
SHROOM3Q8TF72 KIAA0391-211ENST00000605870 1406 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms