Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 OR6S1-201ENST00000320704 996 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 RHOC-205ENST00000369636 786 ntTSL 2 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 ASS1P1-201ENST00000402854 1237 ntBASIC13.07□□□□□ -0.32
COL28A1Q2UY09 AL359092.2-201ENST00000423330 585 ntBASIC13.07□□□□□ -0.32
COL28A1Q2UY09 HNRNPA3P6-201ENST00000472163 1006 ntBASIC13.07□□□□□ -0.32
COL28A1Q2UY09 AC002996.1-201ENST00000546840 784 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 AL512310.5-201ENST00000551999 515 ntBASIC13.07□□□□□ -0.32
COL28A1Q2UY09 NAT9-204ENST00000578822 839 ntTSL 3 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 MIR4265-201ENST00000582152 99 ntBASIC13.07□□□□□ -0.32
COL28A1Q2UY09 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 AC087072.1-201ENST00000603727 421 ntBASIC13.07□□□□□ -0.32
COL28A1Q2UY09 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 TARM1-202ENST00000616041 1218 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 AC148476.1-201ENST00000622182 705 ntBASIC13.07□□□□□ -0.32
COL28A1Q2UY09 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 FAM226B-201ENST00000602508 1490 ntBASIC13.07□□□□□ -0.32
COL28A1Q2UY09 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 AC019294.4-201ENST00000561777 2905 ntBASIC13.07□□□□□ -0.32
COL28A1Q2UY09 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 AC092053.3-201ENST00000641308 4975 ntBASIC13.07□□□□□ -0.32
COL28A1Q2UY09 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 TTC23L-203ENST00000505624 1353 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC13.07□□□□□ -0.32
COL28A1Q2UY09 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 AL157996.1-201ENST00000624684 2299 ntBASIC13.06□□□□□ -0.32
COL28A1Q2UY09 GNG12-AS1-201ENST00000413628 2058 ntTSL 2 BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 LINC02449-201ENST00000304751 795 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 OR2T27-201ENST00000344889 954 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 TEX33-203ENST00000405091 1149 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 RN7SKP212-201ENST00000410851 328 ntBASIC13.06□□□□□ -0.32
COL28A1Q2UY09 LINC00265-2P-201ENST00000413372 782 ntBASIC13.06□□□□□ -0.32
COL28A1Q2UY09 AC092573.1-201ENST00000433054 884 ntBASIC13.06□□□□□ -0.32
COL28A1Q2UY09 AC133141.1-201ENST00000443015 339 ntBASIC13.06□□□□□ -0.32
COL28A1Q2UY09 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 RN7SL300P-201ENST00000582522 318 ntBASIC13.06□□□□□ -0.32
COL28A1Q2UY09 MAFG-AS1-202ENST00000583492 969 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 AC007292.1-201ENST00000594444 746 ntTSL 2 BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 AC007193.3-201ENST00000598616 188 ntTSL 3 BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 POU5F1-207ENST00000606567 1236 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 BX322562.1-201ENST00000617004 561 ntBASIC13.06□□□□□ -0.32
COL28A1Q2UY09 AC010531.8-201ENST00000623341 685 ntBASIC13.06□□□□□ -0.32
COL28A1Q2UY09 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms