Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A3P12111 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
COL6A3P12111 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A3P12111 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL6A3P12111 SERPING1-202ENST00000340687 1719 ntTSL 5 BASIC13.34□□□□□ -0.27
COL6A3P12111 FUNDC2P1-201ENST00000327891 570 ntBASIC13.34□□□□□ -0.27
COL6A3P12111 AC005102.1-201ENST00000403118 479 ntBASIC13.34□□□□□ -0.27
COL6A3P12111 AL928921.1-201ENST00000441033 708 ntTSL 3 BASIC13.34□□□□□ -0.27
COL6A3P12111 LINC01524-202ENST00000454600 745 ntTSL 3 BASIC13.34□□□□□ -0.27
COL6A3P12111 RN7SL743P-201ENST00000475032 298 ntBASIC13.34□□□□□ -0.27
COL6A3P12111 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC13.34□□□□□ -0.27
COL6A3P12111 ANAPC15-216ENST00000545680 872 ntAPPRIS ALT1 TSL 2 BASIC13.34□□□□□ -0.27
COL6A3P12111 ZG16B-204ENST00000572863 716 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
COL6A3P12111 AC011471.2-201ENST00000588192 523 ntTSL 4 BASIC13.34□□□□□ -0.27
COL6A3P12111 AC024575.1-201ENST00000590399 682 ntTSL 5 BASIC13.34□□□□□ -0.27
COL6A3P12111 Metazoa_SRP.141-201ENST00000615072 282 ntBASIC13.34□□□□□ -0.27
COL6A3P12111 GAPDHP74-202ENST00000632456 782 ntBASIC13.34□□□□□ -0.27
COL6A3P12111 GOSR2-242ENST00000640711 1083 ntTSL 5 BASIC13.34□□□□□ -0.27
COL6A3P12111 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
COL6A3P12111 SIX1-203ENST00000554986 1959 ntTSL 3 BASIC13.34□□□□□ -0.27
COL6A3P12111 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A3P12111 AC020629.1-201ENST00000550858 1650 ntBASIC13.34□□□□□ -0.27
COL6A3P12111 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
COL6A3P12111 RSPO2-202ENST00000517781 2748 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A3P12111 TUBB8P5-201ENST00000445286 1351 ntBASIC13.34□□□□□ -0.27
COL6A3P12111 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC13.34□□□□□ -0.27
COL6A3P12111 HEXA-209ENST00000567159 1582 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A3P12111 LINC02228-204ENST00000642115 2962 ntBASIC13.34□□□□□ -0.27
COL6A3P12111 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A3P12111 HBA1-202ENST00000397797 504 ntTSL 2 BASIC13.34□□□□□ -0.27
COL6A3P12111 IGHV3OR16-10-201ENST00000425181 350 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
COL6A3P12111 AC069181.1-201ENST00000498256 554 ntBASIC13.34□□□□□ -0.27
COL6A3P12111 NR1H3-230ENST00000527949 1065 ntTSL 2 BASIC13.34□□□□□ -0.27
COL6A3P12111 AC015936.1-201ENST00000591013 1028 ntBASIC13.34□□□□□ -0.27
COL6A3P12111 MIR6131-201ENST00000611729 109 ntBASIC13.34□□□□□ -0.27
COL6A3P12111 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A3P12111 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A3P12111 CCDC181-201ENST00000367805 1914 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A3P12111 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC13.34□□□□□ -0.27
COL6A3P12111 AC007950.2-201ENST00000615045 2347 ntBASIC13.34□□□□□ -0.27
COL6A3P12111 ASGR2-202ENST00000355035 1386 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A3P12111 AC034238.1-214ENST00000609699 1590 ntTSL 5 BASIC13.34□□□□□ -0.27
COL6A3P12111 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A3P12111 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.34□□□□□ -0.27
COL6A3P12111 WSB1-202ENST00000348811 1611 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A3P12111 AL359845.1-201ENST00000458202 1648 ntBASIC13.34□□□□□ -0.27
COL6A3P12111 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A3P12111 C10orf99-201ENST00000372126 888 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A3P12111 C1orf94-201ENST00000373374 2136 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A3P12111 GATA1-201ENST00000376665 1140 ntTSL 5 BASIC13.34□□□□□ -0.27
COL6A3P12111 CD72-203ENST00000378431 849 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A3P12111 CES5AP1-202ENST00000415114 974 ntTSL 5 BASIC13.34□□□□□ -0.27
COL6A3P12111 AL935212.2-201ENST00000419207 718 ntTSL 5 BASIC13.34□□□□□ -0.27
COL6A3P12111 AL139353.2-202ENST00000502430 1213 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A3P12111 OR7E26P-201ENST00000502808 1006 ntBASIC13.34□□□□□ -0.27
COL6A3P12111 AC025752.1-201ENST00000503317 558 ntTSL 4 BASIC13.34□□□□□ -0.27
COL6A3P12111 CYP4F44P-201ENST00000520423 412 ntBASIC13.34□□□□□ -0.27
COL6A3P12111 AC009171.2-201ENST00000573220 318 ntTSL 3 BASIC13.34□□□□□ -0.27
COL6A3P12111 AC008750.4-201ENST00000600974 219 ntTSL 3 BASIC13.34□□□□□ -0.27
COL6A3P12111 AL121845.4-201ENST00000613401 306 ntBASIC13.34□□□□□ -0.27
COL6A3P12111 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL6A3P12111 PKMP1-201ENST00000455804 1523 ntBASIC13.34□□□□□ -0.27
COL6A3P12111 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC13.34□□□□□ -0.27
COL6A3P12111 AC135506.1-201ENST00000603877 1799 ntBASIC13.34□□□□□ -0.27
COL6A3P12111 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.27
COL6A3P12111 AC007191.1-201ENST00000623179 2995 ntBASIC13.33□□□□□ -0.27
COL6A3P12111 AC099494.1-201ENST00000624763 1370 ntBASIC13.33□□□□□ -0.27
COL6A3P12111 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
COL6A3P12111 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
COL6A3P12111 DHX16-201ENST00000376437 1933 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
COL6A3P12111 AP3M2-207ENST00000518421 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A3P12111 SPP1-203ENST00000395080 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A3P12111 AC009061.2-203ENST00000635000 1462 ntTSL 5 BASIC13.33□□□□□ -0.28
COL6A3P12111 WISP1-201ENST00000220856 1205 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A3P12111 PAEP-202ENST00000371766 851 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A3P12111 TRAV3-201ENST00000390425 519 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
COL6A3P12111 LINC01621-201ENST00000438797 481 ntTSL 5 BASIC13.33□□□□□ -0.28
COL6A3P12111 RN7SL186P-201ENST00000466485 297 ntBASIC13.33□□□□□ -0.28
COL6A3P12111 RN7SL386P-201ENST00000485776 297 ntBASIC13.33□□□□□ -0.28
COL6A3P12111 AC084879.1-203ENST00000550470 1257 ntTSL 5 BASIC13.33□□□□□ -0.28
COL6A3P12111 AC115102.1-201ENST00000558044 487 ntTSL 5 BASIC13.33□□□□□ -0.28
COL6A3P12111 MYL4-208ENST00000572316 850 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
COL6A3P12111 KXD1-210ENST00000599000 498 ntTSL 2 BASIC13.33□□□□□ -0.28
COL6A3P12111 UBA3-201ENST00000349511 2112 ntAPPRIS ALT1 TSL 2 BASIC13.33□□□□□ -0.28
COL6A3P12111 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
COL6A3P12111 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC13.33□□□□□ -0.28
COL6A3P12111 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC13.33□□□□□ -0.28
COL6A3P12111 GMPR2-224ENST00000559910 1562 ntTSL 5 BASIC13.33□□□□□ -0.28
COL6A3P12111 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC13.33□□□□□ -0.28
COL6A3P12111 CRYBB2-201ENST00000398215 886 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A3P12111 KRT18P50-201ENST00000404337 1243 ntBASIC13.33□□□□□ -0.28
COL6A3P12111 CALN1-205ENST00000431984 777 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A3P12111 AL645949.2-201ENST00000513434 786 ntBASIC13.33□□□□□ -0.28
COL6A3P12111 AC012146.4-201ENST00000575546 271 ntBASIC13.33□□□□□ -0.28
COL6A3P12111 AC018371.2-201ENST00000583051 913 ntBASIC13.33□□□□□ -0.28
COL6A3P12111 MIR4747-201ENST00000584057 54 ntBASIC13.33□□□□□ -0.28
COL6A3P12111 CDK10-221ENST00000617879 819 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A3P12111 FRMD5-212ENST00000636859 958 ntTSL 5 BASIC13.33□□□□□ -0.28
COL6A3P12111 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A3P12111 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms