Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RPGRIP1-202ENST00000400017 3940 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 AL445250.1-201ENST00000641671 2259 ntBASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 REST-208ENST00000619101 7114 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 CTCFL-208ENST00000432255 2955 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 MAST4-202ENST00000403625 10711 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 LINC01973-201ENST00000374983 4678 ntTSL 2 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 COL19A1-205ENST00000620364 6233 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 MESD-201ENST00000261758 4264 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 BCRP2-203ENST00000461808 1832 ntTSL 2 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 PAPLN-203ENST00000554301 4090 ntAPPRIS ALT2 TSL 2 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 RBM15-203ENST00000602849 3368 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 NEK4-207ENST00000535191 2452 ntTSL 2 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 ARHGAP45-210ENST00000590214 4191 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 GPR176-201ENST00000299092 3844 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 UROS-201ENST00000368774 744 ntTSL 2 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 NPPA-201ENST00000376476 728 ntTSL 3 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 FAM58BP-201ENST00000439056 645 ntBASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 MARK2P5-201ENST00000507649 634 ntBASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 ALG1L6P-201ENST00000515248 758 ntBASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 AC003686.1-201ENST00000550956 1034 ntBASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 CSH2-206ENST00000560142 749 ntTSL 5 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 TPM1-223ENST00000560445 485 ntTSL 3 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 AC140658.4-201ENST00000561990 352 ntBASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 HKR1-225ENST00000592168 566 ntTSL 4 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 BNIP3P13-201ENST00000599968 566 ntBASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 MIR6816-201ENST00000620368 66 ntBASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 MIR6858-201ENST00000620733 67 ntBASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 AL161773.1-201ENST00000624845 863 ntBASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 CDH4-203ENST00000614565 6513 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 SDR9C7-201ENST00000293502 1765 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 MADD-201ENST00000311027 5990 ntAPPRIS P4 TSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 NAV1-203ENST00000367302 9685 ntTSL 5 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 TRPM5-201ENST00000155858 3929 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 PRKAB2-201ENST00000254101 5417 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 AP000437.1-201ENST00000624057 2085 ntBASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 AC000120.1-201ENST00000414227 1589 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 RBM15-201ENST00000369784 4244 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 C4orf33-201ENST00000281146 6170 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 ZNF568-206ENST00000455427 2378 ntTSL 2 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 NFKB1-202ENST00000394820 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 TRHDE-AS1-201ENST00000426250 3684 ntTSL 5 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 RABGEF1-210ENST00000437078 4319 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
PDLIM3Q53GG5 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC11.4□□□□□ -0.59
PDLIM3Q53GG5 GAB2-201ENST00000340149 6052 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
PDLIM3Q53GG5 AC073862.5-201ENST00000624129 2027 ntBASIC11.4□□□□□ -0.59
PDLIM3Q53GG5 PLEKHG3-201ENST00000247226 10351 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
PDLIM3Q53GG5 KCNH1-209ENST00000639952 8075 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
PDLIM3Q53GG5 RNF150-206ENST00000515673 9805 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.59
PDLIM3Q53GG5 WDR47-204ENST00000369965 4240 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.59
PDLIM3Q53GG5 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.59
PDLIM3Q53GG5 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 CARS-214ENST00000529772 2637 ntTSL 2 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 STK26-204ENST00000481105 1835 ntTSL 2 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 ADAMTSL4-202ENST00000369038 4167 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 ZMIZ1-202ENST00000446377 6686 ntTSL 5 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 TRPM5-202ENST00000528453 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 VDR-202ENST00000395324 4762 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 AL162431.2-201ENST00000358073 2424 ntTSL 2 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 RGL4-202ENST00000401461 2420 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 ZNF426-204ENST00000593003 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 B3GAT2-202ENST00000615536 5206 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 RPS6KA2-211ENST00000510118 5992 ntTSL 2 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 LOXHD1-210ENST00000536736 6848 ntAPPRIS P5 TSL 5 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 RBM12B-201ENST00000399300 7269 ntAPPRIS P2 TSL 2 BASIC11.39□□□□□ -0.59
PDLIM3Q53GG5 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms