Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 FGFR2-212ENST00000369060 3244 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 LINC01209-201ENST00000451289 2400 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 SEC24B-202ENST00000399100 3780 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
RAE1P78406 DTX2P1-201ENST00000425797 1633 ntBASIC12.8□□□□□ -0.36
RAE1P78406 DDC-206ENST00000431062 1620 ntTSL 5 BASIC12.8□□□□□ -0.36
RAE1P78406 DUSP11-202ENST00000443070 2175 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 VENTXP1-201ENST00000569334 2716 ntBASIC12.8□□□□□ -0.36
RAE1P78406 DMTF1-201ENST00000331242 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 STK24-201ENST00000376547 2492 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 FSTL1-202ENST00000424703 1396 ntTSL 2 BASIC12.8□□□□□ -0.36
RAE1P78406 PIGG-208ENST00000504346 3019 ntTSL 2 BASIC12.8□□□□□ -0.36
RAE1P78406 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC12.8□□□□□ -0.36
RAE1P78406 AC107375.1-201ENST00000564464 2231 ntBASIC12.8□□□□□ -0.36
RAE1P78406 TGM5-207ENST00000622115 2202 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
RAE1P78406 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
RAE1P78406 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC12.8□□□□□ -0.36
RAE1P78406 STK40-203ENST00000373130 3628 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 RBPJ-203ENST00000345843 1682 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RAE1P78406 TNN-202ENST00000621086 4234 ntTSL 5 BASIC12.8□□□□□ -0.36
RAE1P78406 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC12.79□□□□□ -0.36
RAE1P78406 BDH1-202ENST00000392378 3455 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 GOLGA2P5-201ENST00000266746 2395 ntBASIC12.79□□□□□ -0.36
RAE1P78406 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 LILRB1-203ENST00000396317 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 ATP6V1B1-201ENST00000234396 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
RAE1P78406 WDR60-202ENST00000407559 3769 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 OR7E115P-201ENST00000382617 1024 ntBASIC12.79□□□□□ -0.36
RAE1P78406 ABCD1P4-201ENST00000399687 604 ntBASIC12.79□□□□□ -0.36
RAE1P78406 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC12.79□□□□□ -0.36
RAE1P78406 LINP1-201ENST00000417112 917 ntTSL 2 BASIC12.79□□□□□ -0.36
RAE1P78406 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC12.79□□□□□ -0.36
RAE1P78406 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 EEF1DP6-201ENST00000449232 372 ntBASIC12.79□□□□□ -0.36
RAE1P78406 RPL29P2-202ENST00000498671 657 ntBASIC12.79□□□□□ -0.36
RAE1P78406 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC12.79□□□□□ -0.36
RAE1P78406 BCDIN3D-AS1-202ENST00000549124 468 ntTSL 3 BASIC12.79□□□□□ -0.36
RAE1P78406 MT3-202ENST00000561640 514 ntTSL 3 BASIC12.79□□□□□ -0.36
RAE1P78406 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC12.79□□□□□ -0.36
RAE1P78406 AP001462.1-201ENST00000594089 452 ntBASIC12.79□□□□□ -0.36
RAE1P78406 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC12.79□□□□□ -0.36
RAE1P78406 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC12.79□□□□□ -0.36
RAE1P78406 AC005618.3-201ENST00000624928 458 ntBASIC12.79□□□□□ -0.36
RAE1P78406 TRPM5-202ENST00000528453 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 NR3C1-204ENST00000394466 3245 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
RAE1P78406 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC12.79□□□□□ -0.36
RAE1P78406 SRSF5-201ENST00000394366 1638 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 H1FX-AS1-201ENST00000383461 2600 ntTSL 2 BASIC12.79□□□□□ -0.36
RAE1P78406 LIN28B-203ENST00000637759 2635 ntTSL 5 BASIC12.79□□□□□ -0.36
RAE1P78406 GRIA3-208ENST00000620581 2991 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 DPY19L2P2-205ENST00000439473 3994 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 AC074138.1-201ENST00000611182 1303 ntBASIC12.79□□□□□ -0.36
RAE1P78406 SH2D2A-203ENST00000392306 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
RAE1P78406 CUL4A-204ENST00000451881 3724 ntTSL 5 BASIC12.79□□□□□ -0.36
RAE1P78406 KCNH4-202ENST00000607371 3723 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
RAE1P78406 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 EPB42-202ENST00000441366 2374 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 NLRP2-204ENST00000391721 3420 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
RAE1P78406 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 RNF34-203ENST00000392465 2051 ntAPPRIS P3 TSL 5 BASIC12.79□□□□□ -0.36
RAE1P78406 TRIM40-207ENST00000396581 2086 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 AC009501.1-201ENST00000429952 2069 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC12.79□□□□□ -0.36
RAE1P78406 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 NECTIN2-201ENST00000252483 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
RAE1P78406 HEY2-202ENST00000368365 2461 ntTSL 2 BASIC12.79□□□□□ -0.36
RAE1P78406 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
RAE1P78406 AAAS-201ENST00000209873 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RAE1P78406 APEX1-201ENST00000216714 1484 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RAE1P78406 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC12.78□□□□□ -0.36
RAE1P78406 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RAE1P78406 AC027369.3-201ENST00000530465 3707 ntBASIC12.78□□□□□ -0.36
RAE1P78406 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RAE1P78406 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
RAE1P78406 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RAE1P78406 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
RAE1P78406 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
RAE1P78406 ZNF772-203ENST00000425074 1601 ntTSL 2 BASIC12.78□□□□□ -0.36
RAE1P78406 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC12.78□□□□□ -0.36
RAE1P78406 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RAE1P78406 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC12.78□□□□□ -0.36
RAE1P78406 PEX1-204ENST00000438045 3329 ntTSL 2 BASIC12.78□□□□□ -0.36
RAE1P78406 ZNF197-204ENST00000383745 2935 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RAE1P78406 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RAE1P78406 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC12.78□□□□□ -0.36
RAE1P78406 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
RAE1P78406 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC12.78□□□□□ -0.36
RAE1P78406 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC12.78□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms