Protein–RNA interactions for Protein: Q9Y5H2

PCDHGA11, Protocadherin gamma-A11, humanhuman

Predictions only

Length 935 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11Q9Y5H2 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHGA11Q9Y5H2 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.52■■□□□ 1.04
PCDHGA11Q9Y5H2 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.52■■□□□ 1.03
PCDHGA11Q9Y5H2 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
PCDHGA11Q9Y5H2 LINC00565-201ENST00000562710 2331 ntBASIC21.51■■□□□ 1.03
PCDHGA11Q9Y5H2 FP325331.1-202ENST00000623531 1380 ntBASIC21.51■■□□□ 1.03
PCDHGA11Q9Y5H2 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHGA11Q9Y5H2 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.51■■□□□ 1.03
PCDHGA11Q9Y5H2 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHGA11Q9Y5H2 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.51■■□□□ 1.03
PCDHGA11Q9Y5H2 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.51■■□□□ 1.03
PCDHGA11Q9Y5H2 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHGA11Q9Y5H2 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.51■■□□□ 1.03
PCDHGA11Q9Y5H2 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
PCDHGA11Q9Y5H2 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDHGA11Q9Y5H2 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PCDHGA11Q9Y5H2 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.5■■□□□ 1.03
PCDHGA11Q9Y5H2 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
PCDHGA11Q9Y5H2 UNC93B8-201ENST00000511903 705 ntBASIC21.5■■□□□ 1.03
PCDHGA11Q9Y5H2 MIR6724-1-201ENST00000616420 92 ntBASIC21.5■■□□□ 1.03
PCDHGA11Q9Y5H2 MIR6724-2-201ENST00000616483 92 ntBASIC21.5■■□□□ 1.03
PCDHGA11Q9Y5H2 MIR6724-4-201ENST00000617390 92 ntBASIC21.5■■□□□ 1.03
PCDHGA11Q9Y5H2 MIR6724-3-201ENST00000622482 92 ntBASIC21.5■■□□□ 1.03
PCDHGA11Q9Y5H2 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDHGA11Q9Y5H2 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
PCDHGA11Q9Y5H2 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDHGA11Q9Y5H2 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.5■■□□□ 1.03
PCDHGA11Q9Y5H2 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHGA11Q9Y5H2 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHGA11Q9Y5H2 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.49■■□□□ 1.03
PCDHGA11Q9Y5H2 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHGA11Q9Y5H2 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHGA11Q9Y5H2 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHGA11Q9Y5H2 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.49■■□□□ 1.03
PCDHGA11Q9Y5H2 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.49■■□□□ 1.03
PCDHGA11Q9Y5H2 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHGA11Q9Y5H2 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
PCDHGA11Q9Y5H2 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
PCDHGA11Q9Y5H2 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.48■■□□□ 1.03
PCDHGA11Q9Y5H2 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHGA11Q9Y5H2 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
PCDHGA11Q9Y5H2 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.48■■□□□ 1.03
PCDHGA11Q9Y5H2 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.48■■□□□ 1.03
PCDHGA11Q9Y5H2 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
PCDHGA11Q9Y5H2 LINC01529-204ENST00000636474 1715 ntBASIC21.48■■□□□ 1.03
PCDHGA11Q9Y5H2 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHGA11Q9Y5H2 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHGA11Q9Y5H2 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
PCDHGA11Q9Y5H2 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHGA11Q9Y5H2 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.48■■□□□ 1.03
PCDHGA11Q9Y5H2 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHGA11Q9Y5H2 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.47■■□□□ 1.03
PCDHGA11Q9Y5H2 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
PCDHGA11Q9Y5H2 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHGA11Q9Y5H2 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHGA11Q9Y5H2 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
PCDHGA11Q9Y5H2 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.47■■□□□ 1.03
PCDHGA11Q9Y5H2 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHGA11Q9Y5H2 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.47■■□□□ 1.03
PCDHGA11Q9Y5H2 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHGA11Q9Y5H2 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.46■■□□□ 1.03
PCDHGA11Q9Y5H2 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
PCDHGA11Q9Y5H2 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHGA11Q9Y5H2 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHGA11Q9Y5H2 AC009102.2-201ENST00000606772 1639 ntBASIC21.46■■□□□ 1.03
PCDHGA11Q9Y5H2 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.45■■□□□ 1.03
PCDHGA11Q9Y5H2 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.45■■□□□ 1.02
PCDHGA11Q9Y5H2 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHGA11Q9Y5H2 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
PCDHGA11Q9Y5H2 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.45■■□□□ 1.02
PCDHGA11Q9Y5H2 KRT16P3-201ENST00000439127 1283 ntBASIC21.45■■□□□ 1.02
PCDHGA11Q9Y5H2 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.45■■□□□ 1.02
PCDHGA11Q9Y5H2 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHGA11Q9Y5H2 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
PCDHGA11Q9Y5H2 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
PCDHGA11Q9Y5H2 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
PCDHGA11Q9Y5H2 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHGA11Q9Y5H2 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
PCDHGA11Q9Y5H2 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.44■■□□□ 1.02
PCDHGA11Q9Y5H2 GUSBP5-201ENST00000418136 578 ntBASIC21.44■■□□□ 1.02
PCDHGA11Q9Y5H2 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.44■■□□□ 1.02
PCDHGA11Q9Y5H2 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.44■■□□□ 1.02
PCDHGA11Q9Y5H2 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHGA11Q9Y5H2 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.44■■□□□ 1.02
PCDHGA11Q9Y5H2 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.44■■□□□ 1.02
PCDHGA11Q9Y5H2 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHGA11Q9Y5H2 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
PCDHGA11Q9Y5H2 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHGA11Q9Y5H2 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.44■■□□□ 1.02
PCDHGA11Q9Y5H2 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHGA11Q9Y5H2 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.43■■□□□ 1.02
PCDHGA11Q9Y5H2 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.43■■□□□ 1.02
PCDHGA11Q9Y5H2 C1orf229-201ENST00000623686 2258 ntBASIC21.43■■□□□ 1.02
PCDHGA11Q9Y5H2 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHGA11Q9Y5H2 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.43■■□□□ 1.02
PCDHGA11Q9Y5H2 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.43■■□□□ 1.02
PCDHGA11Q9Y5H2 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.43■■□□□ 1.02
PCDHGA11Q9Y5H2 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHGA11Q9Y5H2 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
PCDHGA11Q9Y5H2 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms