Protein–RNA interactions for Protein: Q9Y5F3

PCDHB1, Protocadherin beta-1, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB1Q9Y5F3 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC22.23■■□□□ 1.15
PCDHB1Q9Y5F3 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PCDHB1Q9Y5F3 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHB1Q9Y5F3 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHB1Q9Y5F3 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC22.22■■□□□ 1.15
PCDHB1Q9Y5F3 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHB1Q9Y5F3 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHB1Q9Y5F3 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHB1Q9Y5F3 MIR939-201ENST00000401314 82 ntBASIC22.22■■□□□ 1.15
PCDHB1Q9Y5F3 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHB1Q9Y5F3 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC22.22■■□□□ 1.15
PCDHB1Q9Y5F3 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHB1Q9Y5F3 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHB1Q9Y5F3 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHB1Q9Y5F3 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC22.22■■□□□ 1.15
PCDHB1Q9Y5F3 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHB1Q9Y5F3 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHB1Q9Y5F3 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC22.21■■□□□ 1.15
PCDHB1Q9Y5F3 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC22.21■■□□□ 1.15
PCDHB1Q9Y5F3 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHB1Q9Y5F3 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHB1Q9Y5F3 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHB1Q9Y5F3 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHB1Q9Y5F3 AP001330.3-201ENST00000520123 633 ntBASIC22.21■■□□□ 1.15
PCDHB1Q9Y5F3 ANKRD20A6P-201ENST00000618763 204 ntBASIC22.21■■□□□ 1.15
PCDHB1Q9Y5F3 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC22.21■■□□□ 1.15
PCDHB1Q9Y5F3 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHB1Q9Y5F3 AC144652.1-201ENST00000609974 1624 ntBASIC22.2■■□□□ 1.15
PCDHB1Q9Y5F3 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
PCDHB1Q9Y5F3 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PCDHB1Q9Y5F3 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
PCDHB1Q9Y5F3 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC22.2■■□□□ 1.14
PCDHB1Q9Y5F3 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PCDHB1Q9Y5F3 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC22.2■■□□□ 1.14
PCDHB1Q9Y5F3 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
PCDHB1Q9Y5F3 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
PCDHB1Q9Y5F3 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PCDHB1Q9Y5F3 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
PCDHB1Q9Y5F3 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PCDHB1Q9Y5F3 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC22.19■■□□□ 1.14
PCDHB1Q9Y5F3 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHB1Q9Y5F3 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHB1Q9Y5F3 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHB1Q9Y5F3 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC22.19■■□□□ 1.14
PCDHB1Q9Y5F3 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
PCDHB1Q9Y5F3 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHB1Q9Y5F3 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHB1Q9Y5F3 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC22.19■■□□□ 1.14
PCDHB1Q9Y5F3 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHB1Q9Y5F3 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PCDHB1Q9Y5F3 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
PCDHB1Q9Y5F3 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC22.18■■□□□ 1.14
PCDHB1Q9Y5F3 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC22.18■■□□□ 1.14
PCDHB1Q9Y5F3 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
PCDHB1Q9Y5F3 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PCDHB1Q9Y5F3 RBM38-205ENST00000440234 686 ntTSL 2 BASIC22.18■■□□□ 1.14
PCDHB1Q9Y5F3 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC22.18■■□□□ 1.14
PCDHB1Q9Y5F3 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PCDHB1Q9Y5F3 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHB1Q9Y5F3 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHB1Q9Y5F3 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHB1Q9Y5F3 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHB1Q9Y5F3 LTK-203ENST00000453182 2412 ntTSL 2 BASIC22.17■■□□□ 1.14
PCDHB1Q9Y5F3 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHB1Q9Y5F3 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC22.17■■□□□ 1.14
PCDHB1Q9Y5F3 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC22.17■■□□□ 1.14
PCDHB1Q9Y5F3 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC22.17■■□□□ 1.14
PCDHB1Q9Y5F3 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC22.17■■□□□ 1.14
PCDHB1Q9Y5F3 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHB1Q9Y5F3 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHB1Q9Y5F3 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
PCDHB1Q9Y5F3 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC22.16■■□□□ 1.14
PCDHB1Q9Y5F3 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHB1Q9Y5F3 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
PCDHB1Q9Y5F3 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHB1Q9Y5F3 PARL-206ENST00000435888 1098 ntTSL 5 BASIC22.16■■□□□ 1.14
PCDHB1Q9Y5F3 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC22.16■■□□□ 1.14
PCDHB1Q9Y5F3 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHB1Q9Y5F3 DUX4L19-201ENST00000557448 1267 ntBASIC22.16■■□□□ 1.14
PCDHB1Q9Y5F3 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC22.16■■□□□ 1.14
PCDHB1Q9Y5F3 MIR6821-201ENST00000617625 74 ntBASIC22.16■■□□□ 1.14
PCDHB1Q9Y5F3 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC22.16■■□□□ 1.14
PCDHB1Q9Y5F3 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHB1Q9Y5F3 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHB1Q9Y5F3 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC22.15■■□□□ 1.14
PCDHB1Q9Y5F3 FP325331.1-202ENST00000623531 1380 ntBASIC22.15■■□□□ 1.14
PCDHB1Q9Y5F3 AC068473.5-201ENST00000616428 2072 ntBASIC22.15■■□□□ 1.14
PCDHB1Q9Y5F3 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHB1Q9Y5F3 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHB1Q9Y5F3 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHB1Q9Y5F3 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC22.15■■□□□ 1.14
PCDHB1Q9Y5F3 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC22.15■■□□□ 1.14
PCDHB1Q9Y5F3 AC091305.1-201ENST00000479476 895 ntBASIC22.15■■□□□ 1.14
PCDHB1Q9Y5F3 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC22.15■■□□□ 1.14
PCDHB1Q9Y5F3 MIR4767-201ENST00000582827 78 ntBASIC22.15■■□□□ 1.14
PCDHB1Q9Y5F3 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHB1Q9Y5F3 AL353803.4-201ENST00000565882 1934 ntBASIC22.15■■□□□ 1.14
PCDHB1Q9Y5F3 SYT6-210ENST00000641643 1587 ntBASIC22.15■■□□□ 1.14
PCDHB1Q9Y5F3 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
PCDHB1Q9Y5F3 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC22.14■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms