Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC42.62■■■■■ 4.41
SHROOM4Q9ULL8 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC42.62■■■■■ 4.41
SHROOM4Q9ULL8 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC42.62■■■■■ 4.41
SHROOM4Q9ULL8 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC42.61■■■■■ 4.41
SHROOM4Q9ULL8 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC42.61■■■■■ 4.41
SHROOM4Q9ULL8 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC42.61■■■■■ 4.41
SHROOM4Q9ULL8 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC42.6■■■■■ 4.41
SHROOM4Q9ULL8 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC42.6■■■■■ 4.41
SHROOM4Q9ULL8 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC42.6■■■■■ 4.41
SHROOM4Q9ULL8 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC42.6■■■■■ 4.41
SHROOM4Q9ULL8 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC42.6■■■■■ 4.41
SHROOM4Q9ULL8 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC42.6■■■■■ 4.41
SHROOM4Q9ULL8 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC42.59■■■■■ 4.41
SHROOM4Q9ULL8 PPP1R14BP3-201ENST00000509033 445 ntBASIC42.59■■■■■ 4.41
SHROOM4Q9ULL8 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC42.59■■■■■ 4.41
SHROOM4Q9ULL8 pRNA.6-201ENST00000610482 90 ntBASIC42.59■■■■■ 4.41
SHROOM4Q9ULL8 pRNA.5-201ENST00000612139 90 ntBASIC42.59■■■■■ 4.41
SHROOM4Q9ULL8 pRNA.11-201ENST00000618423 90 ntBASIC42.59■■■■■ 4.41
SHROOM4Q9ULL8 pRNA.13-201ENST00000619112 90 ntBASIC42.59■■■■■ 4.41
SHROOM4Q9ULL8 TMEM191A-211ENST00000637163 1067 ntBASIC42.59■■■■■ 4.41
SHROOM4Q9ULL8 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC42.59■■■■■ 4.41
SHROOM4Q9ULL8 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC42.59■■■■■ 4.41
SHROOM4Q9ULL8 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC42.59■■■■■ 4.41
SHROOM4Q9ULL8 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC42.58■■■■■ 4.41
SHROOM4Q9ULL8 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC42.58■■■■■ 4.41
SHROOM4Q9ULL8 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC42.58■■■■■ 4.41
SHROOM4Q9ULL8 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC42.58■■■■■ 4.41
SHROOM4Q9ULL8 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC42.58■■■■■ 4.41
SHROOM4Q9ULL8 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC42.58■■■■■ 4.41
SHROOM4Q9ULL8 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC42.58■■■■■ 4.41
SHROOM4Q9ULL8 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC42.58■■■■■ 4.41
SHROOM4Q9ULL8 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC42.57■■■■■ 4.41
SHROOM4Q9ULL8 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC42.57■■■■■ 4.41
SHROOM4Q9ULL8 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC42.57■■■■■ 4.41
SHROOM4Q9ULL8 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC42.57■■■■■ 4.41
SHROOM4Q9ULL8 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC42.57■■■■■ 4.41
SHROOM4Q9ULL8 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC42.56■■■■■ 4.4
SHROOM4Q9ULL8 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC42.56■■■■■ 4.4
SHROOM4Q9ULL8 AC026185.1-201ENST00000445748 174 ntBASIC42.56■■■■■ 4.4
SHROOM4Q9ULL8 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC42.56■■■■■ 4.4
SHROOM4Q9ULL8 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC42.56■■■■■ 4.4
SHROOM4Q9ULL8 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC42.56■■■■■ 4.4
SHROOM4Q9ULL8 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC42.56■■■■■ 4.4
SHROOM4Q9ULL8 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC42.56■■■■■ 4.4
SHROOM4Q9ULL8 HSCB-202ENST00000398941 955 ntTSL 2 BASIC42.55■■■■■ 4.4
SHROOM4Q9ULL8 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC42.55■■■■■ 4.4
SHROOM4Q9ULL8 AC066615.1-201ENST00000640911 628 ntBASIC42.55■■■■■ 4.4
SHROOM4Q9ULL8 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC42.55■■■■■ 4.4
SHROOM4Q9ULL8 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC42.55■■■■■ 4.4
SHROOM4Q9ULL8 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC42.55■■■■■ 4.4
SHROOM4Q9ULL8 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC42.54■■■■■ 4.4
SHROOM4Q9ULL8 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC42.54■■■■■ 4.4
SHROOM4Q9ULL8 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC42.54■■■■■ 4.4
SHROOM4Q9ULL8 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC42.54■■■■■ 4.4
SHROOM4Q9ULL8 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC42.54■■■■■ 4.4
SHROOM4Q9ULL8 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC42.54■■■■■ 4.4
SHROOM4Q9ULL8 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC42.54■■■■■ 4.4
SHROOM4Q9ULL8 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC42.53■■■■■ 4.4
SHROOM4Q9ULL8 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC42.53■■■■■ 4.4
SHROOM4Q9ULL8 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC42.52■■■■■ 4.4
SHROOM4Q9ULL8 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC42.52■■■■■ 4.4
SHROOM4Q9ULL8 AL355802.2-201ENST00000402069 882 ntBASIC42.52■■■■■ 4.4
SHROOM4Q9ULL8 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC42.52■■■■■ 4.4
SHROOM4Q9ULL8 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC42.52■■■■■ 4.4
SHROOM4Q9ULL8 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC42.52■■■■■ 4.4
SHROOM4Q9ULL8 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC42.52■■■■■ 4.4
SHROOM4Q9ULL8 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC42.52■■■■■ 4.4
SHROOM4Q9ULL8 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC42.51■■■■■ 4.4
SHROOM4Q9ULL8 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC42.51■■■■■ 4.4
SHROOM4Q9ULL8 EI24-213ENST00000618552 1747 ntTSL 5 BASIC42.51■■■■■ 4.4
SHROOM4Q9ULL8 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC42.51■■■■■ 4.4
SHROOM4Q9ULL8 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC42.5■■■■■ 4.39
SHROOM4Q9ULL8 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC42.5■■■■■ 4.39
SHROOM4Q9ULL8 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC42.5■■■■■ 4.39
SHROOM4Q9ULL8 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC42.5■■■■■ 4.39
SHROOM4Q9ULL8 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC42.5■■■■■ 4.39
SHROOM4Q9ULL8 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC42.49■■■■■ 4.39
SHROOM4Q9ULL8 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC42.49■■■■■ 4.39
SHROOM4Q9ULL8 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC42.49■■■■■ 4.39
SHROOM4Q9ULL8 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC42.49■■■■■ 4.39
SHROOM4Q9ULL8 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC42.49■■■■■ 4.39
SHROOM4Q9ULL8 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC42.49■■■■■ 4.39
SHROOM4Q9ULL8 MAP2K4P1-201ENST00000438453 1195 ntBASIC42.49■■■■■ 4.39
SHROOM4Q9ULL8 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC42.48■■■■■ 4.39
SHROOM4Q9ULL8 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC42.48■■■■■ 4.39
SHROOM4Q9ULL8 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC42.48■■■■■ 4.39
SHROOM4Q9ULL8 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC42.48■■■■■ 4.39
SHROOM4Q9ULL8 CROCCP5-201ENST00000436658 830 ntBASIC42.48■■■■■ 4.39
SHROOM4Q9ULL8 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC42.48■■■■■ 4.39
SHROOM4Q9ULL8 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC42.47■■■■■ 4.39
SHROOM4Q9ULL8 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC42.47■■■■■ 4.39
SHROOM4Q9ULL8 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC42.47■■■■■ 4.39
SHROOM4Q9ULL8 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC42.46■■■■■ 4.39
SHROOM4Q9ULL8 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC42.46■■■■■ 4.39
SHROOM4Q9ULL8 NCF1B-203ENST00000435988 1254 ntBASIC42.46■■■■■ 4.39
SHROOM4Q9ULL8 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC42.46■■■■■ 4.39
SHROOM4Q9ULL8 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC42.46■■■■■ 4.39
SHROOM4Q9ULL8 AL499627.2-201ENST00000606283 725 ntBASIC42.46■■■■■ 4.39
SHROOM4Q9ULL8 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC42.46■■■■■ 4.39
SHROOM4Q9ULL8 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC42.46■■■■■ 4.39
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms