Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SSX3Q99909 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC18.48■□□□□ 0.55
SSX3Q99909 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
SSX3Q99909 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SSX3Q99909 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SSX3Q99909 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SSX3Q99909 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC18.48■□□□□ 0.55
SSX3Q99909 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SSX3Q99909 AL136116.3-201ENST00000402907 1138 ntBASIC18.48■□□□□ 0.55
SSX3Q99909 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC18.48■□□□□ 0.55
SSX3Q99909 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC18.48■□□□□ 0.55
SSX3Q99909 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC18.48■□□□□ 0.55
SSX3Q99909 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
SSX3Q99909 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SSX3Q99909 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SSX3Q99909 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SSX3Q99909 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SSX3Q99909 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SSX3Q99909 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SSX3Q99909 HLA-L-211ENST00000482052 1765 ntBASIC18.47■□□□□ 0.55
SSX3Q99909 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
SSX3Q99909 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SSX3Q99909 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SSX3Q99909 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SSX3Q99909 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SSX3Q99909 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
SSX3Q99909 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SSX3Q99909 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
SSX3Q99909 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SSX3Q99909 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC18.47■□□□□ 0.55
SSX3Q99909 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC18.47■□□□□ 0.55
SSX3Q99909 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC18.47■□□□□ 0.55
SSX3Q99909 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SSX3Q99909 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC18.47■□□□□ 0.55
SSX3Q99909 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SSX3Q99909 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SSX3Q99909 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SSX3Q99909 AC005703.6-201ENST00000623265 1329 ntBASIC18.47■□□□□ 0.55
SSX3Q99909 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SSX3Q99909 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SSX3Q99909 EED-207ENST00000528180 1745 ntTSL 5 BASIC18.46■□□□□ 0.55
SSX3Q99909 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC18.46■□□□□ 0.55
SSX3Q99909 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
SSX3Q99909 REST-206ENST00000612429 1376 ntTSL 5 BASIC18.46■□□□□ 0.55
SSX3Q99909 REST-207ENST00000616975 1370 ntTSL 5 BASIC18.46■□□□□ 0.55
SSX3Q99909 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SSX3Q99909 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SSX3Q99909 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC18.46■□□□□ 0.55
SSX3Q99909 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
SSX3Q99909 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.55
SSX3Q99909 AP003733.4-201ENST00000623785 1697 ntBASIC18.46■□□□□ 0.55
SSX3Q99909 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
SSX3Q99909 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SSX3Q99909 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.54
SSX3Q99909 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SSX3Q99909 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC18.45■□□□□ 0.54
SSX3Q99909 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SSX3Q99909 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SSX3Q99909 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
SSX3Q99909 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SSX3Q99909 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC18.45■□□□□ 0.54
SSX3Q99909 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SSX3Q99909 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SSX3Q99909 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SSX3Q99909 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SSX3Q99909 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SSX3Q99909 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SSX3Q99909 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
SSX3Q99909 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
SSX3Q99909 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SSX3Q99909 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SSX3Q99909 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SSX3Q99909 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SSX3Q99909 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SSX3Q99909 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
SSX3Q99909 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
SSX3Q99909 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SSX3Q99909 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SSX3Q99909 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SSX3Q99909 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC18.44■□□□□ 0.54
SSX3Q99909 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SSX3Q99909 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SSX3Q99909 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SSX3Q99909 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SSX3Q99909 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
SSX3Q99909 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
SSX3Q99909 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC18.43■□□□□ 0.54
SSX3Q99909 MIR4466-201ENST00000606121 54 ntBASIC18.43■□□□□ 0.54
SSX3Q99909 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SSX3Q99909 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC18.43■□□□□ 0.54
SSX3Q99909 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC18.43■□□□□ 0.54
SSX3Q99909 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC18.43■□□□□ 0.54
SSX3Q99909 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SSX3Q99909 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
SSX3Q99909 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SSX3Q99909 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC18.42■□□□□ 0.54
SSX3Q99909 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SSX3Q99909 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
SSX3Q99909 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SSX3Q99909 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms