Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC30.2■■■□□ 2.43
ABCA3Q99758 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
ABCA3Q99758 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC30.2■■■□□ 2.43
ABCA3Q99758 AC066615.1-201ENST00000640911 628 ntBASIC30.2■■■□□ 2.43
ABCA3Q99758 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
ABCA3Q99758 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC30.2■■■□□ 2.42
ABCA3Q99758 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC30.2■■■□□ 2.42
ABCA3Q99758 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
ABCA3Q99758 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
ABCA3Q99758 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC30.19■■■□□ 2.42
ABCA3Q99758 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC30.19■■■□□ 2.42
ABCA3Q99758 SHD-204ENST00000599689 1729 ntTSL 5 BASIC30.19■■■□□ 2.42
ABCA3Q99758 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC30.19■■■□□ 2.42
ABCA3Q99758 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC30.19■■■□□ 2.42
ABCA3Q99758 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
ABCA3Q99758 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
ABCA3Q99758 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC30.18■■■□□ 2.42
ABCA3Q99758 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
ABCA3Q99758 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC30.17■■■□□ 2.42
ABCA3Q99758 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC30.17■■■□□ 2.42
ABCA3Q99758 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
ABCA3Q99758 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC30.17■■■□□ 2.42
ABCA3Q99758 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
ABCA3Q99758 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC30.17■■■□□ 2.42
ABCA3Q99758 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
ABCA3Q99758 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC30.17■■■□□ 2.42
ABCA3Q99758 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC30.17■■■□□ 2.42
ABCA3Q99758 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC30.16■■■□□ 2.42
ABCA3Q99758 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC30.16■■■□□ 2.42
ABCA3Q99758 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
ABCA3Q99758 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
ABCA3Q99758 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC30.16■■■□□ 2.42
ABCA3Q99758 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
ABCA3Q99758 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
ABCA3Q99758 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
ABCA3Q99758 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
ABCA3Q99758 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC30.16■■■□□ 2.42
ABCA3Q99758 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
ABCA3Q99758 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
ABCA3Q99758 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
ABCA3Q99758 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC30.15■■■□□ 2.42
ABCA3Q99758 AC142086.2-201ENST00000569753 217 ntBASIC30.15■■■□□ 2.42
ABCA3Q99758 MFSD11-216ENST00000590393 1141 ntBASIC30.15■■■□□ 2.42
ABCA3Q99758 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
ABCA3Q99758 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
ABCA3Q99758 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
ABCA3Q99758 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC30.14■■■□□ 2.42
ABCA3Q99758 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC30.14■■■□□ 2.42
ABCA3Q99758 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC30.14■■■□□ 2.42
ABCA3Q99758 DUX4L4-201ENST00000566884 1269 ntBASIC30.14■■■□□ 2.42
ABCA3Q99758 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC30.14■■■□□ 2.41
ABCA3Q99758 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC30.14■■■□□ 2.41
ABCA3Q99758 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.41
ABCA3Q99758 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
ABCA3Q99758 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC30.13■■■□□ 2.41
ABCA3Q99758 SLC7A5P2-201ENST00000553010 536 ntBASIC30.13■■■□□ 2.41
ABCA3Q99758 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
ABCA3Q99758 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
ABCA3Q99758 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
ABCA3Q99758 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC30.13■■■□□ 2.41
ABCA3Q99758 MIR4651-201ENST00000582622 73 ntBASIC30.13■■■□□ 2.41
ABCA3Q99758 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC30.13■■■□□ 2.41
ABCA3Q99758 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC30.12■■■□□ 2.41
ABCA3Q99758 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
ABCA3Q99758 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC30.12■■■□□ 2.41
ABCA3Q99758 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC30.12■■■□□ 2.41
ABCA3Q99758 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC30.12■■■□□ 2.41
ABCA3Q99758 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
ABCA3Q99758 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC30.12■■■□□ 2.41
ABCA3Q99758 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC30.12■■■□□ 2.41
ABCA3Q99758 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
ABCA3Q99758 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
ABCA3Q99758 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
ABCA3Q99758 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
ABCA3Q99758 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
ABCA3Q99758 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
ABCA3Q99758 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC30.11■■■□□ 2.41
ABCA3Q99758 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC30.1■■■□□ 2.41
ABCA3Q99758 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
ABCA3Q99758 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
ABCA3Q99758 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC30.1■■■□□ 2.41
ABCA3Q99758 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC30.1■■■□□ 2.41
ABCA3Q99758 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC30.1■■■□□ 2.41
ABCA3Q99758 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC30.1■■■□□ 2.41
ABCA3Q99758 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC30.1■■■□□ 2.41
ABCA3Q99758 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC30.1■■■□□ 2.41
ABCA3Q99758 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC30.1■■■□□ 2.41
ABCA3Q99758 KRT19P1-201ENST00000405746 1186 ntBASIC30.1■■■□□ 2.41
ABCA3Q99758 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC30.1■■■□□ 2.41
ABCA3Q99758 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
ABCA3Q99758 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC30.1■■■□□ 2.41
ABCA3Q99758 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC30.1■■■□□ 2.41
ABCA3Q99758 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
ABCA3Q99758 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC30.09■■■□□ 2.41
ABCA3Q99758 SHF-207ENST00000560540 2062 ntTSL 5 BASIC30.09■■■□□ 2.41
ABCA3Q99758 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
ABCA3Q99758 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
ABCA3Q99758 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC30.09■■■□□ 2.41
ABCA3Q99758 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC30.09■■■□□ 2.41
ABCA3Q99758 TMEM191A-211ENST00000637163 1067 ntBASIC30.09■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms