Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC24.66■■□□□ 1.54
CCDC65Q8IXS2 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC24.66■■□□□ 1.54
CCDC65Q8IXS2 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC65Q8IXS2 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC65Q8IXS2 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC24.65■■□□□ 1.54
CCDC65Q8IXS2 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC24.65■■□□□ 1.54
CCDC65Q8IXS2 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC65Q8IXS2 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC65Q8IXS2 AC241377.3-202ENST00000626088 1088 ntBASIC24.65■■□□□ 1.54
CCDC65Q8IXS2 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC24.65■■□□□ 1.54
CCDC65Q8IXS2 AC241585.3-202ENST00000628937 1088 ntBASIC24.65■■□□□ 1.54
CCDC65Q8IXS2 AC245100.8-202ENST00000629247 1058 ntBASIC24.65■■□□□ 1.54
CCDC65Q8IXS2 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC65Q8IXS2 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
CCDC65Q8IXS2 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CCDC65Q8IXS2 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC24.65■■□□□ 1.54
CCDC65Q8IXS2 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC24.64■■□□□ 1.54
CCDC65Q8IXS2 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC24.64■■□□□ 1.54
CCDC65Q8IXS2 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC24.64■■□□□ 1.54
CCDC65Q8IXS2 QDPR-206ENST00000508623 601 ntTSL 3 BASIC24.64■■□□□ 1.54
CCDC65Q8IXS2 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC24.64■■□□□ 1.54
CCDC65Q8IXS2 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC24.64■■□□□ 1.54
CCDC65Q8IXS2 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC24.64■■□□□ 1.54
CCDC65Q8IXS2 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC24.64■■□□□ 1.54
CCDC65Q8IXS2 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC24.64■■□□□ 1.53
CCDC65Q8IXS2 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
CCDC65Q8IXS2 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
CCDC65Q8IXS2 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
CCDC65Q8IXS2 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC24.63■■□□□ 1.53
CCDC65Q8IXS2 C1orf229-201ENST00000623686 2258 ntBASIC24.63■■□□□ 1.53
CCDC65Q8IXS2 GATM-206ENST00000558336 1522 ntTSL 2 BASIC24.63■■□□□ 1.53
CCDC65Q8IXS2 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC65Q8IXS2 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC65Q8IXS2 RPP21-222ENST00000433076 577 ntTSL 2 BASIC24.63■■□□□ 1.53
CCDC65Q8IXS2 AL512631.2-201ENST00000604634 923 ntBASIC24.63■■□□□ 1.53
CCDC65Q8IXS2 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC24.63■■□□□ 1.53
CCDC65Q8IXS2 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
CCDC65Q8IXS2 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC65Q8IXS2 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC24.62■■□□□ 1.53
CCDC65Q8IXS2 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC65Q8IXS2 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC65Q8IXS2 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC65Q8IXS2 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC24.62■■□□□ 1.53
CCDC65Q8IXS2 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC24.62■■□□□ 1.53
CCDC65Q8IXS2 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC65Q8IXS2 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC24.62■■□□□ 1.53
CCDC65Q8IXS2 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC65Q8IXS2 GALC-202ENST00000393568 2054 ntTSL 2 BASIC24.62■■□□□ 1.53
CCDC65Q8IXS2 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
CCDC65Q8IXS2 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC24.61■■□□□ 1.53
CCDC65Q8IXS2 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC24.61■■□□□ 1.53
CCDC65Q8IXS2 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC65Q8IXS2 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC24.61■■□□□ 1.53
CCDC65Q8IXS2 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC65Q8IXS2 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC24.6■■□□□ 1.53
CCDC65Q8IXS2 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC24.6■■□□□ 1.53
CCDC65Q8IXS2 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC24.6■■□□□ 1.53
CCDC65Q8IXS2 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CCDC65Q8IXS2 TRIR-202ENST00000588213 841 ntTSL 3 BASIC24.6■■□□□ 1.53
CCDC65Q8IXS2 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC24.6■■□□□ 1.53
CCDC65Q8IXS2 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC24.6■■□□□ 1.53
CCDC65Q8IXS2 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC24.6■■□□□ 1.53
CCDC65Q8IXS2 COMT-203ENST00000403184 2217 ntTSL 2 BASIC24.59■■□□□ 1.53
CCDC65Q8IXS2 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC24.59■■□□□ 1.53
CCDC65Q8IXS2 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC24.59■■□□□ 1.53
CCDC65Q8IXS2 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC24.59■■□□□ 1.53
CCDC65Q8IXS2 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC24.59■■□□□ 1.53
CCDC65Q8IXS2 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC65Q8IXS2 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC65Q8IXS2 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC24.59■■□□□ 1.53
CCDC65Q8IXS2 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC24.59■■□□□ 1.53
CCDC65Q8IXS2 SRD5A1P1-201ENST00000442297 786 ntBASIC24.59■■□□□ 1.53
CCDC65Q8IXS2 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC65Q8IXS2 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
CCDC65Q8IXS2 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC65Q8IXS2 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC65Q8IXS2 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC65Q8IXS2 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC65Q8IXS2 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
CCDC65Q8IXS2 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC24.59■■□□□ 1.53
CCDC65Q8IXS2 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC24.58■■□□□ 1.53
CCDC65Q8IXS2 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC65Q8IXS2 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC24.58■■□□□ 1.53
CCDC65Q8IXS2 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC65Q8IXS2 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC65Q8IXS2 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC65Q8IXS2 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC65Q8IXS2 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC65Q8IXS2 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC65Q8IXS2 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC24.58■■□□□ 1.52
CCDC65Q8IXS2 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC65Q8IXS2 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC65Q8IXS2 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC65Q8IXS2 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC65Q8IXS2 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC65Q8IXS2 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC65Q8IXS2 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC65Q8IXS2 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC65Q8IXS2 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC24.57■■□□□ 1.52
CCDC65Q8IXS2 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC24.57■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms