Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SKA3Q8IX90 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.61■□□□□ 0.73
SKA3Q8IX90 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.61■□□□□ 0.73
SKA3Q8IX90 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SKA3Q8IX90 DUSP8P3-201ENST00000399571 1760 ntBASIC19.6■□□□□ 0.73
SKA3Q8IX90 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.6■□□□□ 0.73
SKA3Q8IX90 FP325331.1-202ENST00000623531 1380 ntBASIC19.6■□□□□ 0.73
SKA3Q8IX90 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SKA3Q8IX90 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
SKA3Q8IX90 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC19.6■□□□□ 0.73
SKA3Q8IX90 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC19.6■□□□□ 0.73
SKA3Q8IX90 AC131281.2-201ENST00000520478 145 ntBASIC19.6■□□□□ 0.73
SKA3Q8IX90 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
SKA3Q8IX90 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC19.6■□□□□ 0.73
SKA3Q8IX90 MIR4466-201ENST00000606121 54 ntBASIC19.6■□□□□ 0.73
SKA3Q8IX90 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SKA3Q8IX90 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SKA3Q8IX90 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SKA3Q8IX90 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SKA3Q8IX90 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SKA3Q8IX90 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SKA3Q8IX90 LINC01529-204ENST00000636474 1715 ntBASIC19.59■□□□□ 0.73
SKA3Q8IX90 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SKA3Q8IX90 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SKA3Q8IX90 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
SKA3Q8IX90 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SKA3Q8IX90 GATM-206ENST00000558336 1522 ntTSL 2 BASIC19.59■□□□□ 0.73
SKA3Q8IX90 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC19.59■□□□□ 0.73
SKA3Q8IX90 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SKA3Q8IX90 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.59■□□□□ 0.73
SKA3Q8IX90 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SKA3Q8IX90 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SKA3Q8IX90 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SKA3Q8IX90 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
SKA3Q8IX90 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SKA3Q8IX90 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.58■□□□□ 0.73
SKA3Q8IX90 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.58■□□□□ 0.73
SKA3Q8IX90 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
SKA3Q8IX90 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SKA3Q8IX90 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC19.58■□□□□ 0.73
SKA3Q8IX90 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SKA3Q8IX90 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SKA3Q8IX90 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
SKA3Q8IX90 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SKA3Q8IX90 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SKA3Q8IX90 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
SKA3Q8IX90 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SKA3Q8IX90 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SKA3Q8IX90 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SKA3Q8IX90 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SKA3Q8IX90 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
SKA3Q8IX90 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SKA3Q8IX90 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC19.57■□□□□ 0.72
SKA3Q8IX90 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SKA3Q8IX90 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC19.57■□□□□ 0.72
SKA3Q8IX90 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC19.57■□□□□ 0.72
SKA3Q8IX90 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SKA3Q8IX90 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.57■□□□□ 0.72
SKA3Q8IX90 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SKA3Q8IX90 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SKA3Q8IX90 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SKA3Q8IX90 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
SKA3Q8IX90 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SKA3Q8IX90 SRD5A1P1-201ENST00000442297 786 ntBASIC19.56■□□□□ 0.72
SKA3Q8IX90 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.56■□□□□ 0.72
SKA3Q8IX90 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC19.56■□□□□ 0.72
SKA3Q8IX90 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC19.56■□□□□ 0.72
SKA3Q8IX90 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SKA3Q8IX90 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SKA3Q8IX90 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SKA3Q8IX90 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC19.55■□□□□ 0.72
SKA3Q8IX90 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SKA3Q8IX90 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SKA3Q8IX90 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.55■□□□□ 0.72
SKA3Q8IX90 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SKA3Q8IX90 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SKA3Q8IX90 DUX4L4-201ENST00000566884 1269 ntBASIC19.55■□□□□ 0.72
SKA3Q8IX90 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SKA3Q8IX90 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SKA3Q8IX90 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SKA3Q8IX90 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SKA3Q8IX90 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SKA3Q8IX90 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC19.54■□□□□ 0.72
SKA3Q8IX90 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SKA3Q8IX90 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
SKA3Q8IX90 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC19.54■□□□□ 0.72
SKA3Q8IX90 AC099791.2-201ENST00000605725 427 ntBASIC19.54■□□□□ 0.72
SKA3Q8IX90 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SKA3Q8IX90 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.54■□□□□ 0.72
SKA3Q8IX90 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.54■□□□□ 0.72
SKA3Q8IX90 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
SKA3Q8IX90 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SKA3Q8IX90 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.54■□□□□ 0.72
SKA3Q8IX90 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
SKA3Q8IX90 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SKA3Q8IX90 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC19.54■□□□□ 0.72
SKA3Q8IX90 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SKA3Q8IX90 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC19.53■□□□□ 0.72
SKA3Q8IX90 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
SKA3Q8IX90 AC241377.3-202ENST00000626088 1088 ntBASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms