Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM40Q6P9F5 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM40Q6P9F5 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.29■■□□□ 1
TRIM40Q6P9F5 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.29■■□□□ 1
TRIM40Q6P9F5 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.29■■□□□ 1
TRIM40Q6P9F5 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM40Q6P9F5 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM40Q6P9F5 AL353803.4-201ENST00000565882 1934 ntBASIC21.29■■□□□ 1
TRIM40Q6P9F5 LINC01529-204ENST00000636474 1715 ntBASIC21.29■■□□□ 1
TRIM40Q6P9F5 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
TRIM40Q6P9F5 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM40Q6P9F5 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.28■■□□□ 1
TRIM40Q6P9F5 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.28■■□□□ 1
TRIM40Q6P9F5 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.28■■□□□ 1
TRIM40Q6P9F5 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.28■■□□□ 1
TRIM40Q6P9F5 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.28■■□□□ 1
TRIM40Q6P9F5 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.28■■□□□ 1
TRIM40Q6P9F5 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.28■■□□□ 1
TRIM40Q6P9F5 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.28■■□□□ 1
TRIM40Q6P9F5 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.28■■□□□ 1
TRIM40Q6P9F5 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.28■■□□□ 1
TRIM40Q6P9F5 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
TRIM40Q6P9F5 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.28■■□□□ 1
TRIM40Q6P9F5 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
TRIM40Q6P9F5 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.27■■□□□ 1
TRIM40Q6P9F5 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.27■■□□□ 1
TRIM40Q6P9F5 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.27■■□□□ 1
TRIM40Q6P9F5 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.27■■□□□ 1
TRIM40Q6P9F5 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.27■□□□□ 0.99
TRIM40Q6P9F5 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.26■□□□□ 0.99
TRIM40Q6P9F5 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM40Q6P9F5 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM40Q6P9F5 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.26■□□□□ 0.99
TRIM40Q6P9F5 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
TRIM40Q6P9F5 AC079834.2-201ENST00000609776 1949 ntBASIC21.26■□□□□ 0.99
TRIM40Q6P9F5 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.26■□□□□ 0.99
TRIM40Q6P9F5 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
TRIM40Q6P9F5 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.26■□□□□ 0.99
TRIM40Q6P9F5 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.26■□□□□ 0.99
TRIM40Q6P9F5 AL512631.2-201ENST00000604634 923 ntBASIC21.26■□□□□ 0.99
TRIM40Q6P9F5 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.26■□□□□ 0.99
TRIM40Q6P9F5 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM40Q6P9F5 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM40Q6P9F5 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
TRIM40Q6P9F5 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.26■□□□□ 0.99
TRIM40Q6P9F5 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM40Q6P9F5 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.26■□□□□ 0.99
TRIM40Q6P9F5 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM40Q6P9F5 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.26■□□□□ 0.99
TRIM40Q6P9F5 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM40Q6P9F5 SRD5A1P1-201ENST00000442297 786 ntBASIC21.25■□□□□ 0.99
TRIM40Q6P9F5 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.25■□□□□ 0.99
TRIM40Q6P9F5 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.25■□□□□ 0.99
TRIM40Q6P9F5 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
TRIM40Q6P9F5 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM40Q6P9F5 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
TRIM40Q6P9F5 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM40Q6P9F5 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM40Q6P9F5 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
TRIM40Q6P9F5 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM40Q6P9F5 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.24■□□□□ 0.99
TRIM40Q6P9F5 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
TRIM40Q6P9F5 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.24■□□□□ 0.99
TRIM40Q6P9F5 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM40Q6P9F5 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM40Q6P9F5 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.24■□□□□ 0.99
TRIM40Q6P9F5 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.24■□□□□ 0.99
TRIM40Q6P9F5 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.24■□□□□ 0.99
TRIM40Q6P9F5 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM40Q6P9F5 AC241377.3-202ENST00000626088 1088 ntBASIC21.24■□□□□ 0.99
TRIM40Q6P9F5 AC241585.3-202ENST00000628937 1088 ntBASIC21.24■□□□□ 0.99
TRIM40Q6P9F5 AC245100.8-202ENST00000629247 1058 ntBASIC21.24■□□□□ 0.99
TRIM40Q6P9F5 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
TRIM40Q6P9F5 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM40Q6P9F5 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM40Q6P9F5 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM40Q6P9F5 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
TRIM40Q6P9F5 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.23■□□□□ 0.99
TRIM40Q6P9F5 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM40Q6P9F5 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM40Q6P9F5 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM40Q6P9F5 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM40Q6P9F5 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM40Q6P9F5 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM40Q6P9F5 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM40Q6P9F5 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM40Q6P9F5 AC131281.2-201ENST00000520478 145 ntBASIC21.23■□□□□ 0.99
TRIM40Q6P9F5 DUX4L4-201ENST00000566884 1269 ntBASIC21.23■□□□□ 0.99
TRIM40Q6P9F5 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.23■□□□□ 0.99
TRIM40Q6P9F5 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM40Q6P9F5 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM40Q6P9F5 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM40Q6P9F5 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM40Q6P9F5 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC21.22■□□□□ 0.99
TRIM40Q6P9F5 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM40Q6P9F5 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM40Q6P9F5 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.22■□□□□ 0.99
TRIM40Q6P9F5 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM40Q6P9F5 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.21■□□□□ 0.99
TRIM40Q6P9F5 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms