Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC23.24■■□□□ 1.31
RNF43Q68DV7 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
RNF43Q68DV7 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
RNF43Q68DV7 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC23.24■■□□□ 1.31
RNF43Q68DV7 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC23.24■■□□□ 1.31
RNF43Q68DV7 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC23.24■■□□□ 1.31
RNF43Q68DV7 AL355001.2-201ENST00000620617 1191 ntBASIC23.24■■□□□ 1.31
RNF43Q68DV7 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
RNF43Q68DV7 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
RNF43Q68DV7 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
RNF43Q68DV7 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
RNF43Q68DV7 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
RNF43Q68DV7 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RNF43Q68DV7 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC23.23■■□□□ 1.31
RNF43Q68DV7 AC105265.2-201ENST00000467189 838 ntBASIC23.23■■□□□ 1.31
RNF43Q68DV7 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC23.23■■□□□ 1.31
RNF43Q68DV7 ANKRD20A6P-201ENST00000618763 204 ntBASIC23.23■■□□□ 1.31
RNF43Q68DV7 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
RNF43Q68DV7 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC23.23■■□□□ 1.31
RNF43Q68DV7 ABCB10P4-201ENST00000566803 2184 ntBASIC23.23■■□□□ 1.31
RNF43Q68DV7 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC23.22■■□□□ 1.31
RNF43Q68DV7 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC23.22■■□□□ 1.31
RNF43Q68DV7 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF43Q68DV7 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF43Q68DV7 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF43Q68DV7 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RNF43Q68DV7 DUX4L19-201ENST00000557448 1267 ntBASIC23.22■■□□□ 1.31
RNF43Q68DV7 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RNF43Q68DV7 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RNF43Q68DV7 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF43Q68DV7 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC23.22■■□□□ 1.31
RNF43Q68DV7 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC23.22■■□□□ 1.31
RNF43Q68DV7 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RNF43Q68DV7 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RNF43Q68DV7 AC092171.4-201ENST00000609130 632 ntBASIC23.21■■□□□ 1.31
RNF43Q68DV7 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC23.21■■□□□ 1.31
RNF43Q68DV7 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC23.21■■□□□ 1.31
RNF43Q68DV7 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
RNF43Q68DV7 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
RNF43Q68DV7 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
RNF43Q68DV7 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RNF43Q68DV7 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
RNF43Q68DV7 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC23.21■■□□□ 1.31
RNF43Q68DV7 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC23.21■■□□□ 1.31
RNF43Q68DV7 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
RNF43Q68DV7 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
RNF43Q68DV7 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RNF43Q68DV7 VGF-203ENST00000611537 1622 ntTSL 5 BASIC23.2■■□□□ 1.3
RNF43Q68DV7 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RNF43Q68DV7 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC23.2■■□□□ 1.3
RNF43Q68DV7 AC024257.2-201ENST00000549699 147 ntBASIC23.2■■□□□ 1.3
RNF43Q68DV7 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC23.2■■□□□ 1.3
RNF43Q68DV7 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RNF43Q68DV7 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RNF43Q68DV7 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC23.2■■□□□ 1.3
RNF43Q68DV7 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RNF43Q68DV7 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
RNF43Q68DV7 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC23.19■■□□□ 1.3
RNF43Q68DV7 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RNF43Q68DV7 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RNF43Q68DV7 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RNF43Q68DV7 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RNF43Q68DV7 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC23.19■■□□□ 1.3
RNF43Q68DV7 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RNF43Q68DV7 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC23.19■■□□□ 1.3
RNF43Q68DV7 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
RNF43Q68DV7 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC23.19■■□□□ 1.3
RNF43Q68DV7 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC23.19■■□□□ 1.3
RNF43Q68DV7 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC23.19■■□□□ 1.3
RNF43Q68DV7 AC241377.3-202ENST00000626088 1088 ntBASIC23.19■■□□□ 1.3
RNF43Q68DV7 AC241585.3-202ENST00000628937 1088 ntBASIC23.19■■□□□ 1.3
RNF43Q68DV7 AC245100.8-202ENST00000629247 1058 ntBASIC23.19■■□□□ 1.3
RNF43Q68DV7 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RNF43Q68DV7 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC23.19■■□□□ 1.3
RNF43Q68DV7 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.19■■□□□ 1.3
RNF43Q68DV7 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC23.19■■□□□ 1.3
RNF43Q68DV7 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RNF43Q68DV7 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RNF43Q68DV7 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
RNF43Q68DV7 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RNF43Q68DV7 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RNF43Q68DV7 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RNF43Q68DV7 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC23.18■■□□□ 1.3
RNF43Q68DV7 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RNF43Q68DV7 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC23.18■■□□□ 1.3
RNF43Q68DV7 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC23.18■■□□□ 1.3
RNF43Q68DV7 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC23.18■■□□□ 1.3
RNF43Q68DV7 AC099791.2-201ENST00000605725 427 ntBASIC23.18■■□□□ 1.3
RNF43Q68DV7 AL138724.1-201ENST00000606771 1088 ntBASIC23.18■■□□□ 1.3
RNF43Q68DV7 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC23.18■■□□□ 1.3
RNF43Q68DV7 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RNF43Q68DV7 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC23.18■■□□□ 1.3
RNF43Q68DV7 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RNF43Q68DV7 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
RNF43Q68DV7 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF43Q68DV7 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
RNF43Q68DV7 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RNF43Q68DV7 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
RNF43Q68DV7 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF43Q68DV7 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms