Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 AC092053.2-201ENST00000640557 1818 ntBASIC21.01■□□□□ 0.95
LRIF1Q5T3J3 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LRIF1Q5T3J3 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.01■□□□□ 0.95
LRIF1Q5T3J3 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
LRIF1Q5T3J3 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LRIF1Q5T3J3 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21■□□□□ 0.95
LRIF1Q5T3J3 GUK1-208ENST00000366728 842 ntTSL 2 BASIC21■□□□□ 0.95
LRIF1Q5T3J3 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LRIF1Q5T3J3 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21■□□□□ 0.95
LRIF1Q5T3J3 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
LRIF1Q5T3J3 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21■□□□□ 0.95
LRIF1Q5T3J3 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
LRIF1Q5T3J3 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LRIF1Q5T3J3 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LRIF1Q5T3J3 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LRIF1Q5T3J3 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LRIF1Q5T3J3 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LRIF1Q5T3J3 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LRIF1Q5T3J3 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
LRIF1Q5T3J3 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.99■□□□□ 0.95
LRIF1Q5T3J3 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LRIF1Q5T3J3 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
LRIF1Q5T3J3 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
LRIF1Q5T3J3 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LRIF1Q5T3J3 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LRIF1Q5T3J3 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LRIF1Q5T3J3 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
LRIF1Q5T3J3 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
LRIF1Q5T3J3 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LRIF1Q5T3J3 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LRIF1Q5T3J3 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.98■□□□□ 0.95
LRIF1Q5T3J3 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.98■□□□□ 0.95
LRIF1Q5T3J3 AC080038.3-201ENST00000623346 1952 ntBASIC20.98■□□□□ 0.95
LRIF1Q5T3J3 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LRIF1Q5T3J3 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.98■□□□□ 0.95
LRIF1Q5T3J3 AC103834.1-201ENST00000520383 144 ntBASIC20.98■□□□□ 0.95
LRIF1Q5T3J3 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.98■□□□□ 0.95
LRIF1Q5T3J3 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.98■□□□□ 0.95
LRIF1Q5T3J3 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LRIF1Q5T3J3 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LRIF1Q5T3J3 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LRIF1Q5T3J3 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.98■□□□□ 0.95
LRIF1Q5T3J3 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.97■□□□□ 0.95
LRIF1Q5T3J3 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
LRIF1Q5T3J3 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
LRIF1Q5T3J3 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.97■□□□□ 0.95
LRIF1Q5T3J3 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LRIF1Q5T3J3 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.97■□□□□ 0.95
LRIF1Q5T3J3 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LRIF1Q5T3J3 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.97■□□□□ 0.95
LRIF1Q5T3J3 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
LRIF1Q5T3J3 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LRIF1Q5T3J3 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.97■□□□□ 0.95
LRIF1Q5T3J3 C11orf96-202ENST00000528572 1834 ntBASIC20.97■□□□□ 0.95
LRIF1Q5T3J3 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LRIF1Q5T3J3 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.96■□□□□ 0.95
LRIF1Q5T3J3 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LRIF1Q5T3J3 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
LRIF1Q5T3J3 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LRIF1Q5T3J3 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
LRIF1Q5T3J3 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.96■□□□□ 0.95
LRIF1Q5T3J3 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
LRIF1Q5T3J3 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
LRIF1Q5T3J3 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
LRIF1Q5T3J3 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
LRIF1Q5T3J3 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
LRIF1Q5T3J3 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LRIF1Q5T3J3 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
LRIF1Q5T3J3 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LRIF1Q5T3J3 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.95■□□□□ 0.94
LRIF1Q5T3J3 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.95■□□□□ 0.94
LRIF1Q5T3J3 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.95■□□□□ 0.94
LRIF1Q5T3J3 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20.95■□□□□ 0.94
LRIF1Q5T3J3 AC137630.3-201ENST00000607245 391 ntBASIC20.95■□□□□ 0.94
LRIF1Q5T3J3 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LRIF1Q5T3J3 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.95■□□□□ 0.94
LRIF1Q5T3J3 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LRIF1Q5T3J3 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
LRIF1Q5T3J3 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
LRIF1Q5T3J3 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LRIF1Q5T3J3 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LRIF1Q5T3J3 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
LRIF1Q5T3J3 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.94■□□□□ 0.94
LRIF1Q5T3J3 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LRIF1Q5T3J3 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LRIF1Q5T3J3 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
LRIF1Q5T3J3 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC20.94■□□□□ 0.94
LRIF1Q5T3J3 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.94■□□□□ 0.94
LRIF1Q5T3J3 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LRIF1Q5T3J3 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.94■□□□□ 0.94
LRIF1Q5T3J3 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.93■□□□□ 0.94
LRIF1Q5T3J3 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LRIF1Q5T3J3 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
LRIF1Q5T3J3 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LRIF1Q5T3J3 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LRIF1Q5T3J3 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.93■□□□□ 0.94
LRIF1Q5T3J3 AC103724.3-201ENST00000564481 992 ntBASIC20.93■□□□□ 0.94
LRIF1Q5T3J3 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.93■□□□□ 0.94
LRIF1Q5T3J3 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LRIF1Q5T3J3 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms