Protein–RNA interactions for Protein: P78556

CCL20, C-C motif chemokine 20, humanhuman

Predictions only

Length 96 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL20P78556 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC17.54■□□□□ 0.4
CCL20P78556 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC17.54■□□□□ 0.4
CCL20P78556 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCL20P78556 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCL20P78556 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC17.53■□□□□ 0.4
CCL20P78556 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CCL20P78556 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCL20P78556 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCL20P78556 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC17.53■□□□□ 0.4
CCL20P78556 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC17.53■□□□□ 0.4
CCL20P78556 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC17.53■□□□□ 0.4
CCL20P78556 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
CCL20P78556 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCL20P78556 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC17.53■□□□□ 0.4
CCL20P78556 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
CCL20P78556 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CCL20P78556 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCL20P78556 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
CCL20P78556 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCL20P78556 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCL20P78556 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCL20P78556 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCL20P78556 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCL20P78556 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCL20P78556 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCL20P78556 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCL20P78556 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCL20P78556 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCL20P78556 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCL20P78556 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCL20P78556 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
CCL20P78556 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCL20P78556 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCL20P78556 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCL20P78556 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCL20P78556 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCL20P78556 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC17.51■□□□□ 0.39
CCL20P78556 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC17.51■□□□□ 0.39
CCL20P78556 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCL20P78556 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC17.51■□□□□ 0.39
CCL20P78556 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCL20P78556 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CCL20P78556 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC17.51■□□□□ 0.39
CCL20P78556 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
CCL20P78556 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCL20P78556 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCL20P78556 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC17.5■□□□□ 0.39
CCL20P78556 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCL20P78556 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCL20P78556 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC17.5■□□□□ 0.39
CCL20P78556 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCL20P78556 HES6-205ENST00000409356 528 ntTSL 2 BASIC17.5■□□□□ 0.39
CCL20P78556 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC17.5■□□□□ 0.39
CCL20P78556 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCL20P78556 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCL20P78556 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCL20P78556 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCL20P78556 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCL20P78556 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCL20P78556 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCL20P78556 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCL20P78556 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCL20P78556 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCL20P78556 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CCL20P78556 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCL20P78556 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC17.49■□□□□ 0.39
CCL20P78556 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC17.49■□□□□ 0.39
CCL20P78556 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCL20P78556 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
CCL20P78556 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCL20P78556 AL157400.5-201ENST00000507624 621 ntBASIC17.49■□□□□ 0.39
CCL20P78556 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
CCL20P78556 EI24-204ENST00000527235 1625 ntTSL 5 BASIC17.49■□□□□ 0.39
CCL20P78556 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC17.49■□□□□ 0.39
CCL20P78556 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC17.49■□□□□ 0.39
CCL20P78556 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCL20P78556 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCL20P78556 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
CCL20P78556 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCL20P78556 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC17.49■□□□□ 0.39
CCL20P78556 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCL20P78556 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCL20P78556 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCL20P78556 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC17.48■□□□□ 0.39
CCL20P78556 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCL20P78556 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCL20P78556 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCL20P78556 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCL20P78556 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCL20P78556 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CCL20P78556 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC17.47■□□□□ 0.39
CCL20P78556 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCL20P78556 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCL20P78556 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC17.47■□□□□ 0.39
CCL20P78556 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC17.47■□□□□ 0.39
CCL20P78556 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCL20P78556 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCL20P78556 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCL20P78556 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
CCL20P78556 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms