Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.66■□□□□ 0.9
CDH12P55289 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CDH12P55289 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CDH12P55289 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDH12P55289 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.66■□□□□ 0.9
CDH12P55289 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CDH12P55289 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDH12P55289 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDH12P55289 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDH12P55289 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDH12P55289 AC137767.1-201ENST00000602918 1920 ntBASIC20.65■□□□□ 0.9
CDH12P55289 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDH12P55289 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDH12P55289 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDH12P55289 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDH12P55289 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDH12P55289 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.65■□□□□ 0.9
CDH12P55289 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDH12P55289 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDH12P55289 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDH12P55289 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CDH12P55289 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
CDH12P55289 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CDH12P55289 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH12P55289 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
CDH12P55289 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CDH12P55289 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH12P55289 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH12P55289 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
CDH12P55289 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH12P55289 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.63■□□□□ 0.89
CDH12P55289 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.63■□□□□ 0.89
CDH12P55289 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH12P55289 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH12P55289 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CDH12P55289 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH12P55289 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.63■□□□□ 0.89
CDH12P55289 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH12P55289 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH12P55289 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.62■□□□□ 0.89
CDH12P55289 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH12P55289 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH12P55289 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
CDH12P55289 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH12P55289 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
CDH12P55289 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
CDH12P55289 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH12P55289 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CDH12P55289 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.62■□□□□ 0.89
CDH12P55289 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH12P55289 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH12P55289 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.62■□□□□ 0.89
CDH12P55289 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH12P55289 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH12P55289 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDH12P55289 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDH12P55289 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
CDH12P55289 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDH12P55289 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CDH12P55289 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDH12P55289 AL353803.4-201ENST00000565882 1934 ntBASIC20.61■□□□□ 0.89
CDH12P55289 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.61■□□□□ 0.89
CDH12P55289 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.61■□□□□ 0.89
CDH12P55289 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.61■□□□□ 0.89
CDH12P55289 AL031848.2-201ENST00000607670 837 ntBASIC20.61■□□□□ 0.89
CDH12P55289 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
CDH12P55289 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDH12P55289 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
CDH12P55289 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDH12P55289 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CDH12P55289 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDH12P55289 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDH12P55289 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDH12P55289 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CDH12P55289 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.6■□□□□ 0.89
CDH12P55289 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDH12P55289 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CDH12P55289 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.59■□□□□ 0.89
CDH12P55289 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDH12P55289 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CDH12P55289 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDH12P55289 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.59■□□□□ 0.89
CDH12P55289 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDH12P55289 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.59■□□□□ 0.89
CDH12P55289 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.59■□□□□ 0.89
CDH12P55289 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDH12P55289 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.59■□□□□ 0.89
CDH12P55289 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
CDH12P55289 SNX5-217ENST00000606557 1087 ntBASIC20.59■□□□□ 0.89
CDH12P55289 AC137630.3-201ENST00000607245 391 ntBASIC20.59■□□□□ 0.89
CDH12P55289 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
CDH12P55289 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.59■□□□□ 0.89
CDH12P55289 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDH12P55289 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDH12P55289 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.59■□□□□ 0.89
CDH12P55289 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.59■□□□□ 0.89
CDH12P55289 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDH12P55289 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CDH12P55289 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.58■□□□□ 0.89
CDH12P55289 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms