Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC18.82■□□□□ 0.6
PDLIM4P50479 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PDLIM4P50479 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PDLIM4P50479 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
PDLIM4P50479 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PDLIM4P50479 GLI3-203ENST00000437480 451 ntTSL 2 BASIC18.81■□□□□ 0.6
PDLIM4P50479 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC18.81■□□□□ 0.6
PDLIM4P50479 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC18.81■□□□□ 0.6
PDLIM4P50479 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC18.81■□□□□ 0.6
PDLIM4P50479 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC18.81■□□□□ 0.6
PDLIM4P50479 SP2-202ENST00000613139 908 ntTSL 5 BASIC18.81■□□□□ 0.6
PDLIM4P50479 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
PDLIM4P50479 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
PDLIM4P50479 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PDLIM4P50479 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PDLIM4P50479 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PDLIM4P50479 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
PDLIM4P50479 AC133637.1-201ENST00000624115 1537 ntBASIC18.8■□□□□ 0.6
PDLIM4P50479 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC18.8■□□□□ 0.6
PDLIM4P50479 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PDLIM4P50479 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PDLIM4P50479 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PDLIM4P50479 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PDLIM4P50479 NME4-202ENST00000382940 766 ntTSL 3 BASIC18.8■□□□□ 0.6
PDLIM4P50479 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PDLIM4P50479 NME4-211ENST00000620944 1193 ntTSL 2 BASIC18.8■□□□□ 0.6
PDLIM4P50479 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PDLIM4P50479 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PDLIM4P50479 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PDLIM4P50479 FP325331.1-202ENST00000623531 1380 ntBASIC18.8■□□□□ 0.6
PDLIM4P50479 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PDLIM4P50479 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PDLIM4P50479 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
PDLIM4P50479 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PDLIM4P50479 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC18.79■□□□□ 0.6
PDLIM4P50479 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC18.79■□□□□ 0.6
PDLIM4P50479 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC18.79■□□□□ 0.6
PDLIM4P50479 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC18.79■□□□□ 0.6
PDLIM4P50479 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PDLIM4P50479 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PDLIM4P50479 AC142381.3-201ENST00000568208 1670 ntBASIC18.79■□□□□ 0.6
PDLIM4P50479 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
PDLIM4P50479 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PDLIM4P50479 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
PDLIM4P50479 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PDLIM4P50479 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
PDLIM4P50479 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PDLIM4P50479 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
PDLIM4P50479 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PDLIM4P50479 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PDLIM4P50479 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
PDLIM4P50479 IGHV3-19-201ENST00000521488 291 ntBASIC18.78■□□□□ 0.6
PDLIM4P50479 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
PDLIM4P50479 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PDLIM4P50479 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PDLIM4P50479 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
PDLIM4P50479 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
PDLIM4P50479 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
PDLIM4P50479 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PDLIM4P50479 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PDLIM4P50479 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
PDLIM4P50479 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC18.77■□□□□ 0.6
PDLIM4P50479 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PDLIM4P50479 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC18.77■□□□□ 0.6
PDLIM4P50479 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC18.77■□□□□ 0.6
PDLIM4P50479 AL499627.2-201ENST00000606283 725 ntBASIC18.77■□□□□ 0.6
PDLIM4P50479 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC18.77■□□□□ 0.6
PDLIM4P50479 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
PDLIM4P50479 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PDLIM4P50479 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PDLIM4P50479 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
PDLIM4P50479 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
PDLIM4P50479 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
PDLIM4P50479 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PDLIM4P50479 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PDLIM4P50479 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PDLIM4P50479 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
PDLIM4P50479 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PDLIM4P50479 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC18.76■□□□□ 0.59
PDLIM4P50479 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PDLIM4P50479 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PDLIM4P50479 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC18.76■□□□□ 0.59
PDLIM4P50479 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC18.76■□□□□ 0.59
PDLIM4P50479 AC034268.1-201ENST00000441047 882 ntBASIC18.76■□□□□ 0.59
PDLIM4P50479 DUX4L4-201ENST00000566884 1269 ntBASIC18.76■□□□□ 0.59
PDLIM4P50479 AL358852.1-201ENST00000623174 1268 ntBASIC18.76■□□□□ 0.59
PDLIM4P50479 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PDLIM4P50479 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PDLIM4P50479 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PDLIM4P50479 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
PDLIM4P50479 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PDLIM4P50479 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC18.76■□□□□ 0.59
PDLIM4P50479 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
PDLIM4P50479 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC18.75■□□□□ 0.59
PDLIM4P50479 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
PDLIM4P50479 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
PDLIM4P50479 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC18.75■□□□□ 0.59
PDLIM4P50479 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PDLIM4P50479 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PDLIM4P50479 YBX1P1-201ENST00000445822 960 ntBASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms