Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC19.48■□□□□ 0.71
CX3CR1P49238 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CX3CR1P49238 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CX3CR1P49238 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CX3CR1P49238 CLTA-206ENST00000466396 695 ntTSL 2 BASIC19.48■□□□□ 0.71
CX3CR1P49238 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC19.48■□□□□ 0.71
CX3CR1P49238 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC19.48■□□□□ 0.71
CX3CR1P49238 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
CX3CR1P49238 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CX3CR1P49238 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CX3CR1P49238 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.48■□□□□ 0.71
CX3CR1P49238 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CX3CR1P49238 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
CX3CR1P49238 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CX3CR1P49238 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.47■□□□□ 0.71
CX3CR1P49238 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CX3CR1P49238 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC19.47■□□□□ 0.71
CX3CR1P49238 AC239859.2-201ENST00000444165 318 ntBASIC19.47■□□□□ 0.71
CX3CR1P49238 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CX3CR1P49238 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
CX3CR1P49238 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CX3CR1P49238 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CX3CR1P49238 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CX3CR1P49238 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
CX3CR1P49238 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CX3CR1P49238 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CX3CR1P49238 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CX3CR1P49238 AC009299.2-201ENST00000482477 511 ntBASIC19.46■□□□□ 0.71
CX3CR1P49238 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CX3CR1P49238 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CX3CR1P49238 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.46■□□□□ 0.71
CX3CR1P49238 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.46■□□□□ 0.71
CX3CR1P49238 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CX3CR1P49238 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CX3CR1P49238 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.45■□□□□ 0.7
CX3CR1P49238 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CX3CR1P49238 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CX3CR1P49238 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CX3CR1P49238 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CX3CR1P49238 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CX3CR1P49238 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CX3CR1P49238 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CX3CR1P49238 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CX3CR1P49238 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC19.45■□□□□ 0.7
CX3CR1P49238 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
CX3CR1P49238 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.44■□□□□ 0.7
CX3CR1P49238 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CX3CR1P49238 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CX3CR1P49238 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC19.44■□□□□ 0.7
CX3CR1P49238 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC19.44■□□□□ 0.7
CX3CR1P49238 AL451085.2-201ENST00000605085 799 ntBASIC19.44■□□□□ 0.7
CX3CR1P49238 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CX3CR1P49238 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CX3CR1P49238 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CX3CR1P49238 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CX3CR1P49238 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CX3CR1P49238 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CX3CR1P49238 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CX3CR1P49238 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.43■□□□□ 0.7
CX3CR1P49238 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CX3CR1P49238 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CX3CR1P49238 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CX3CR1P49238 CD72-202ENST00000378430 585 ntTSL 3 BASIC19.43■□□□□ 0.7
CX3CR1P49238 TSPY9P-201ENST00000440215 945 ntBASIC19.43■□□□□ 0.7
CX3CR1P49238 TSPY11P-201ENST00000442607 1045 ntBASIC19.43■□□□□ 0.7
CX3CR1P49238 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CX3CR1P49238 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CX3CR1P49238 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CX3CR1P49238 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CX3CR1P49238 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CX3CR1P49238 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CX3CR1P49238 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CX3CR1P49238 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.43■□□□□ 0.7
CX3CR1P49238 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CX3CR1P49238 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CX3CR1P49238 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CX3CR1P49238 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CX3CR1P49238 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.42■□□□□ 0.7
CX3CR1P49238 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CX3CR1P49238 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CX3CR1P49238 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CX3CR1P49238 GUSBP5-202ENST00000510805 1989 ntBASIC19.42■□□□□ 0.7
CX3CR1P49238 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.42■□□□□ 0.7
CX3CR1P49238 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CX3CR1P49238 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CX3CR1P49238 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.41■□□□□ 0.7
CX3CR1P49238 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CX3CR1P49238 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CX3CR1P49238 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CX3CR1P49238 AC010997.5-201ENST00000609182 354 ntBASIC19.41■□□□□ 0.7
CX3CR1P49238 LINC01529-204ENST00000636474 1715 ntBASIC19.41■□□□□ 0.7
CX3CR1P49238 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CX3CR1P49238 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CX3CR1P49238 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CX3CR1P49238 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CX3CR1P49238 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
CX3CR1P49238 HES6-204ENST00000409182 863 ntTSL 2 BASIC19.4■□□□□ 0.7
CX3CR1P49238 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CX3CR1P49238 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19.4■□□□□ 0.7
CX3CR1P49238 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms