Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
SHMT2P34897 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SHMT2P34897 FP325331.1-202ENST00000623531 1380 ntBASIC21.73■■□□□ 1.07
SHMT2P34897 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHMT2P34897 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHMT2P34897 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHMT2P34897 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SHMT2P34897 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.72■■□□□ 1.07
SHMT2P34897 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SHMT2P34897 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.72■■□□□ 1.07
SHMT2P34897 SF1-220ENST00000626028 704 ntTSL 2 BASIC21.72■■□□□ 1.07
SHMT2P34897 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHMT2P34897 AC144652.1-201ENST00000609974 1624 ntBASIC21.72■■□□□ 1.07
SHMT2P34897 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
SHMT2P34897 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SHMT2P34897 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHMT2P34897 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.71■■□□□ 1.07
SHMT2P34897 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.71■■□□□ 1.07
SHMT2P34897 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHMT2P34897 SYT6-210ENST00000641643 1587 ntBASIC21.71■■□□□ 1.07
SHMT2P34897 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHMT2P34897 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHMT2P34897 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
SHMT2P34897 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
SHMT2P34897 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.71■■□□□ 1.07
SHMT2P34897 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.71■■□□□ 1.07
SHMT2P34897 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHMT2P34897 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.71■■□□□ 1.07
SHMT2P34897 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
SHMT2P34897 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.07
SHMT2P34897 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
SHMT2P34897 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.7■■□□□ 1.07
SHMT2P34897 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
SHMT2P34897 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.7■■□□□ 1.06
SHMT2P34897 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.7■■□□□ 1.06
SHMT2P34897 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SHMT2P34897 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SHMT2P34897 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.7■■□□□ 1.06
SHMT2P34897 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.7■■□□□ 1.06
SHMT2P34897 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.7■■□□□ 1.06
SHMT2P34897 AL139246.5-201ENST00000606645 996 ntBASIC21.7■■□□□ 1.06
SHMT2P34897 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
SHMT2P34897 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.7■■□□□ 1.06
SHMT2P34897 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SHMT2P34897 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SHMT2P34897 UNC93B3-201ENST00000308076 687 ntBASIC21.69■■□□□ 1.06
SHMT2P34897 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.69■■□□□ 1.06
SHMT2P34897 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SHMT2P34897 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SHMT2P34897 AC110285.6-201ENST00000617652 491 ntBASIC21.69■■□□□ 1.06
SHMT2P34897 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.69■■□□□ 1.06
SHMT2P34897 RALB-208ENST00000631312 311 ntTSL 5 BASIC21.69■■□□□ 1.06
SHMT2P34897 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SHMT2P34897 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
SHMT2P34897 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SHMT2P34897 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
SHMT2P34897 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SHMT2P34897 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.69■■□□□ 1.06
SHMT2P34897 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.68■■□□□ 1.06
SHMT2P34897 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
SHMT2P34897 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
SHMT2P34897 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.68■■□□□ 1.06
SHMT2P34897 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SHMT2P34897 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SHMT2P34897 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SHMT2P34897 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC21.68■■□□□ 1.06
SHMT2P34897 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.68■■□□□ 1.06
SHMT2P34897 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.68■■□□□ 1.06
SHMT2P34897 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
SHMT2P34897 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.68■■□□□ 1.06
SHMT2P34897 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
SHMT2P34897 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
SHMT2P34897 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SHMT2P34897 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SHMT2P34897 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SHMT2P34897 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SHMT2P34897 LINC01529-204ENST00000636474 1715 ntBASIC21.67■■□□□ 1.06
SHMT2P34897 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SHMT2P34897 PTCHD3P2-201ENST00000424937 1205 ntBASIC21.67■■□□□ 1.06
SHMT2P34897 AC006455.2-201ENST00000429931 906 ntBASIC21.67■■□□□ 1.06
SHMT2P34897 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
SHMT2P34897 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.67■■□□□ 1.06
SHMT2P34897 AL138724.1-201ENST00000606771 1088 ntBASIC21.67■■□□□ 1.06
SHMT2P34897 AL136162.1-201ENST00000607711 1078 ntBASIC21.67■■□□□ 1.06
SHMT2P34897 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
SHMT2P34897 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
SHMT2P34897 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.67■■□□□ 1.06
SHMT2P34897 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SHMT2P34897 AC079630.1-202ENST00000618127 1840 ntBASIC21.66■■□□□ 1.06
SHMT2P34897 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
SHMT2P34897 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
SHMT2P34897 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SHMT2P34897 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SHMT2P34897 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
SHMT2P34897 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
SHMT2P34897 DUX4L4-201ENST00000566884 1269 ntBASIC21.66■■□□□ 1.06
SHMT2P34897 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SHMT2P34897 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
SHMT2P34897 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
SHMT2P34897 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms