Protein–RNA interactions for Protein: P29353

SHC1, SHC-transforming protein 1, humanhuman

Predictions only

Length 583 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHC1P29353 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SHC1P29353 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.32■□□□□ 0.84
SHC1P29353 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.32■□□□□ 0.84
SHC1P29353 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.32■□□□□ 0.84
SHC1P29353 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHC1P29353 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SHC1P29353 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHC1P29353 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
SHC1P29353 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.31■□□□□ 0.84
SHC1P29353 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SHC1P29353 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHC1P29353 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.31■□□□□ 0.84
SHC1P29353 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHC1P29353 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.31■□□□□ 0.84
SHC1P29353 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHC1P29353 AC233723.2-201ENST00000623798 2106 ntBASIC20.31■□□□□ 0.84
SHC1P29353 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.31■□□□□ 0.84
SHC1P29353 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHC1P29353 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHC1P29353 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHC1P29353 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SHC1P29353 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHC1P29353 EP400NL-214ENST00000641289 2402 ntBASIC20.31■□□□□ 0.84
SHC1P29353 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHC1P29353 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHC1P29353 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SHC1P29353 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SHC1P29353 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
SHC1P29353 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.3■□□□□ 0.84
SHC1P29353 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHC1P29353 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SHC1P29353 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SHC1P29353 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.29■□□□□ 0.84
SHC1P29353 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
SHC1P29353 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHC1P29353 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SHC1P29353 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHC1P29353 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHC1P29353 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHC1P29353 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHC1P29353 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.29■□□□□ 0.84
SHC1P29353 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHC1P29353 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHC1P29353 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHC1P29353 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.29■□□□□ 0.84
SHC1P29353 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.29■□□□□ 0.84
SHC1P29353 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHC1P29353 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHC1P29353 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SHC1P29353 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHC1P29353 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHC1P29353 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHC1P29353 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
SHC1P29353 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHC1P29353 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.28■□□□□ 0.84
SHC1P29353 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHC1P29353 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHC1P29353 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SHC1P29353 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SHC1P29353 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SHC1P29353 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SHC1P29353 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SHC1P29353 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHC1P29353 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
SHC1P29353 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.27■□□□□ 0.84
SHC1P29353 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHC1P29353 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
SHC1P29353 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.27■□□□□ 0.84
SHC1P29353 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHC1P29353 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHC1P29353 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SHC1P29353 C17orf82-201ENST00000623772 1530 ntBASIC20.27■□□□□ 0.83
SHC1P29353 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHC1P29353 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.26■□□□□ 0.83
SHC1P29353 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHC1P29353 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHC1P29353 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHC1P29353 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.26■□□□□ 0.83
SHC1P29353 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHC1P29353 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHC1P29353 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
SHC1P29353 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHC1P29353 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.26■□□□□ 0.83
SHC1P29353 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.26■□□□□ 0.83
SHC1P29353 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.26■□□□□ 0.83
SHC1P29353 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.26■□□□□ 0.83
SHC1P29353 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SHC1P29353 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHC1P29353 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHC1P29353 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SHC1P29353 AC079630.1-202ENST00000618127 1840 ntBASIC20.25■□□□□ 0.83
SHC1P29353 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
SHC1P29353 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SHC1P29353 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SHC1P29353 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.25■□□□□ 0.83
SHC1P29353 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHC1P29353 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHC1P29353 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SHC1P29353 AL136116.3-201ENST00000402907 1138 ntBASIC20.25■□□□□ 0.83
SHC1P29353 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms