Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.32■□□□□ 0.84
MSX1P28360 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSX1P28360 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSX1P28360 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.32■□□□□ 0.84
MSX1P28360 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.32■□□□□ 0.84
MSX1P28360 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
MSX1P28360 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
MSX1P28360 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.32■□□□□ 0.84
MSX1P28360 AC099791.2-201ENST00000605725 427 ntBASIC20.32■□□□□ 0.84
MSX1P28360 MIR5787-201ENST00000611784 55 ntBASIC20.32■□□□□ 0.84
MSX1P28360 AC009086.3-201ENST00000623486 1008 ntBASIC20.32■□□□□ 0.84
MSX1P28360 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSX1P28360 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSX1P28360 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSX1P28360 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSX1P28360 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.32■□□□□ 0.84
MSX1P28360 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.32■□□□□ 0.84
MSX1P28360 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSX1P28360 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSX1P28360 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.31■□□□□ 0.84
MSX1P28360 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSX1P28360 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSX1P28360 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSX1P28360 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.31■□□□□ 0.84
MSX1P28360 DUSP8P3-201ENST00000399571 1760 ntBASIC20.31■□□□□ 0.84
MSX1P28360 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSX1P28360 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSX1P28360 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.3■□□□□ 0.84
MSX1P28360 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSX1P28360 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSX1P28360 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.3■□□□□ 0.84
MSX1P28360 DUSP8P5-201ENST00000422884 1815 ntBASIC20.3■□□□□ 0.84
MSX1P28360 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.3■□□□□ 0.84
MSX1P28360 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MSX1P28360 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MSX1P28360 AC105265.2-201ENST00000467189 838 ntBASIC20.3■□□□□ 0.84
MSX1P28360 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.3■□□□□ 0.84
MSX1P28360 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSX1P28360 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSX1P28360 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.3■□□□□ 0.84
MSX1P28360 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
MSX1P28360 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
MSX1P28360 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.29■□□□□ 0.84
MSX1P28360 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.29■□□□□ 0.84
MSX1P28360 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.29■□□□□ 0.84
MSX1P28360 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.29■□□□□ 0.84
MSX1P28360 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MSX1P28360 AC104564.3-201ENST00000582367 638 ntBASIC20.29■□□□□ 0.84
MSX1P28360 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.29■□□□□ 0.84
MSX1P28360 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSX1P28360 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSX1P28360 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSX1P28360 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.28■□□□□ 0.84
MSX1P28360 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSX1P28360 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSX1P28360 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
MSX1P28360 AF213884.3-201ENST00000563833 479 ntBASIC20.28■□□□□ 0.84
MSX1P28360 AL499627.2-201ENST00000606283 725 ntBASIC20.28■□□□□ 0.84
MSX1P28360 AL136967.2-201ENST00000623968 743 ntBASIC20.28■□□□□ 0.84
MSX1P28360 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.28■□□□□ 0.84
MSX1P28360 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.28■□□□□ 0.84
MSX1P28360 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
MSX1P28360 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
MSX1P28360 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.27■□□□□ 0.84
MSX1P28360 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
MSX1P28360 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSX1P28360 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSX1P28360 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.27■□□□□ 0.84
MSX1P28360 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.27■□□□□ 0.84
MSX1P28360 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSX1P28360 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
MSX1P28360 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSX1P28360 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSX1P28360 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.27■□□□□ 0.84
MSX1P28360 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.27■□□□□ 0.84
MSX1P28360 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.27■□□□□ 0.84
MSX1P28360 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.27■□□□□ 0.84
MSX1P28360 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.27■□□□□ 0.84
MSX1P28360 AL138724.1-201ENST00000606771 1088 ntBASIC20.27■□□□□ 0.84
MSX1P28360 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSX1P28360 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSX1P28360 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
MSX1P28360 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
MSX1P28360 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.27■□□□□ 0.83
MSX1P28360 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.83
MSX1P28360 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.83
MSX1P28360 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
MSX1P28360 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSX1P28360 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.26■□□□□ 0.83
MSX1P28360 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.26■□□□□ 0.83
MSX1P28360 SYT6-210ENST00000641643 1587 ntBASIC20.26■□□□□ 0.83
MSX1P28360 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSX1P28360 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.26■□□□□ 0.83
MSX1P28360 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSX1P28360 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
MSX1P28360 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSX1P28360 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.26■□□□□ 0.83
MSX1P28360 MIR939-201ENST00000401314 82 ntBASIC20.26■□□□□ 0.83
MSX1P28360 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MSX1P28360 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms