Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 REST-206ENST00000612429 1376 ntTSL 5 BASIC16.88■□□□□ 0.29
HLA-DMBP28068 REST-207ENST00000616975 1370 ntTSL 5 BASIC16.88■□□□□ 0.29
HLA-DMBP28068 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DMBP28068 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
HLA-DMBP28068 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
HLA-DMBP28068 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DMBP28068 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC16.87■□□□□ 0.29
HLA-DMBP28068 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DMBP28068 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC16.87■□□□□ 0.29
HLA-DMBP28068 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC16.87■□□□□ 0.29
HLA-DMBP28068 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DMBP28068 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC16.87■□□□□ 0.29
HLA-DMBP28068 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC16.87■□□□□ 0.29
HLA-DMBP28068 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DMBP28068 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DMBP28068 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC16.87■□□□□ 0.29
HLA-DMBP28068 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
HLA-DMBP28068 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DMBP28068 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HLA-DMBP28068 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DMBP28068 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DMBP28068 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DMBP28068 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC16.86■□□□□ 0.29
HLA-DMBP28068 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DMBP28068 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DMBP28068 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DMBP28068 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DMBP28068 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
HLA-DMBP28068 GUSBP5-201ENST00000418136 578 ntBASIC16.86■□□□□ 0.29
HLA-DMBP28068 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC16.86■□□□□ 0.29
HLA-DMBP28068 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DMBP28068 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DMBP28068 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC16.86■□□□□ 0.29
HLA-DMBP28068 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DMBP28068 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HLA-DMBP28068 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DMBP28068 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DMBP28068 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC16.85■□□□□ 0.29
HLA-DMBP28068 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
HLA-DMBP28068 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DMBP28068 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC16.85■□□□□ 0.29
HLA-DMBP28068 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DMBP28068 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DMBP28068 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DMBP28068 BX664725.1-201ENST00000438252 379 ntBASIC16.85■□□□□ 0.29
HLA-DMBP28068 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
HLA-DMBP28068 KRT125P-201ENST00000546827 989 ntBASIC16.85■□□□□ 0.29
HLA-DMBP28068 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC16.85■□□□□ 0.29
HLA-DMBP28068 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DMBP28068 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HLA-DMBP28068 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
HLA-DMBP28068 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
HLA-DMBP28068 ECEL1P1-201ENST00000373592 1742 ntBASIC16.84■□□□□ 0.29
HLA-DMBP28068 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DMBP28068 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DMBP28068 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DMBP28068 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DMBP28068 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DMBP28068 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC16.84■□□□□ 0.29
HLA-DMBP28068 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
HLA-DMBP28068 Z92544.1-202ENST00000571933 1220 ntBASIC16.84■□□□□ 0.29
HLA-DMBP28068 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DMBP28068 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC16.84■□□□□ 0.29
HLA-DMBP28068 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC16.84■□□□□ 0.29
HLA-DMBP28068 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DMBP28068 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DMBP28068 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
HLA-DMBP28068 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DMBP28068 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DMBP28068 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC16.84■□□□□ 0.29
HLA-DMBP28068 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC16.84■□□□□ 0.29
HLA-DMBP28068 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
HLA-DMBP28068 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
HLA-DMBP28068 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DMBP28068 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HLA-DMBP28068 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
HLA-DMBP28068 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HLA-DMBP28068 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC16.83■□□□□ 0.28
HLA-DMBP28068 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
HLA-DMBP28068 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
HLA-DMBP28068 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC16.83■□□□□ 0.28
HLA-DMBP28068 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HLA-DMBP28068 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HLA-DMBP28068 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
HLA-DMBP28068 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HLA-DMBP28068 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC16.83■□□□□ 0.28
HLA-DMBP28068 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC16.83■□□□□ 0.28
HLA-DMBP28068 AC137630.3-201ENST00000607245 391 ntBASIC16.83■□□□□ 0.28
HLA-DMBP28068 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC16.83■□□□□ 0.28
HLA-DMBP28068 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
HLA-DMBP28068 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HLA-DMBP28068 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC16.82■□□□□ 0.28
HLA-DMBP28068 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC16.82■□□□□ 0.28
HLA-DMBP28068 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HLA-DMBP28068 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HLA-DMBP28068 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC16.82■□□□□ 0.28
HLA-DMBP28068 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC16.82■□□□□ 0.28
HLA-DMBP28068 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HLA-DMBP28068 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC16.82■□□□□ 0.28
HLA-DMBP28068 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms