Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
MSH3P20585 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.12
MSH3P20585 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC22.08■■□□□ 1.12
MSH3P20585 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH3P20585 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
MSH3P20585 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH3P20585 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
MSH3P20585 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC22.07■■□□□ 1.12
MSH3P20585 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC22.07■■□□□ 1.12
MSH3P20585 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH3P20585 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC22.07■■□□□ 1.12
MSH3P20585 DUX4L19-201ENST00000557448 1267 ntBASIC22.07■■□□□ 1.12
MSH3P20585 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC22.07■■□□□ 1.12
MSH3P20585 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
MSH3P20585 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC22.07■■□□□ 1.12
MSH3P20585 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH3P20585 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC22.07■■□□□ 1.12
MSH3P20585 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC22.07■■□□□ 1.12
MSH3P20585 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC22.06■■□□□ 1.12
MSH3P20585 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
MSH3P20585 AC006455.2-201ENST00000429931 906 ntBASIC22.06■■□□□ 1.12
MSH3P20585 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC22.06■■□□□ 1.12
MSH3P20585 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
MSH3P20585 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC22.06■■□□□ 1.12
MSH3P20585 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
MSH3P20585 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
MSH3P20585 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
MSH3P20585 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC22.06■■□□□ 1.12
MSH3P20585 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
MSH3P20585 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC22.05■■□□□ 1.12
MSH3P20585 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC22.05■■□□□ 1.12
MSH3P20585 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC22.05■■□□□ 1.12
MSH3P20585 SYT6-210ENST00000641643 1587 ntBASIC22.05■■□□□ 1.12
MSH3P20585 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
MSH3P20585 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
MSH3P20585 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
MSH3P20585 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
MSH3P20585 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
MSH3P20585 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
MSH3P20585 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC22.05■■□□□ 1.12
MSH3P20585 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
MSH3P20585 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
MSH3P20585 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
MSH3P20585 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH3P20585 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
MSH3P20585 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH3P20585 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC22.04■■□□□ 1.12
MSH3P20585 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH3P20585 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC22.04■■□□□ 1.12
MSH3P20585 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC22.04■■□□□ 1.12
MSH3P20585 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC22.04■■□□□ 1.12
MSH3P20585 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC22.04■■□□□ 1.12
MSH3P20585 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
MSH3P20585 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
MSH3P20585 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH3P20585 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC22.04■■□□□ 1.12
MSH3P20585 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
MSH3P20585 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
MSH3P20585 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
MSH3P20585 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
MSH3P20585 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
MSH3P20585 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC22.03■■□□□ 1.12
MSH3P20585 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH3P20585 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC22.03■■□□□ 1.12
MSH3P20585 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC22.03■■□□□ 1.12
MSH3P20585 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC22.03■■□□□ 1.12
MSH3P20585 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
MSH3P20585 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH3P20585 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH3P20585 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
MSH3P20585 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC22.03■■□□□ 1.12
MSH3P20585 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH3P20585 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
MSH3P20585 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
MSH3P20585 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC22.02■■□□□ 1.12
MSH3P20585 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
MSH3P20585 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
MSH3P20585 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC22.02■■□□□ 1.12
MSH3P20585 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC22.02■■□□□ 1.12
MSH3P20585 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
MSH3P20585 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC22.02■■□□□ 1.12
MSH3P20585 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
MSH3P20585 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC22.02■■□□□ 1.12
MSH3P20585 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
MSH3P20585 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
MSH3P20585 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC22.02■■□□□ 1.12
MSH3P20585 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC22.02■■□□□ 1.12
MSH3P20585 pRNA.6-201ENST00000610482 90 ntBASIC22.02■■□□□ 1.12
MSH3P20585 pRNA.5-201ENST00000612139 90 ntBASIC22.02■■□□□ 1.12
MSH3P20585 pRNA.11-201ENST00000618423 90 ntBASIC22.02■■□□□ 1.12
MSH3P20585 pRNA.13-201ENST00000619112 90 ntBASIC22.02■■□□□ 1.12
MSH3P20585 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC22.02■■□□□ 1.12
MSH3P20585 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
MSH3P20585 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH3P20585 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC22.01■■□□□ 1.11
MSH3P20585 ME2-208ENST00000638937 2471 ntTSL 5 BASIC22.01■■□□□ 1.11
MSH3P20585 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
MSH3P20585 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC22.01■■□□□ 1.11
MSH3P20585 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC22.01■■□□□ 1.11
MSH3P20585 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC22.01■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms