Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMS3P0CW19 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMS3P0CW19 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMS3P0CW19 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.78■□□□□ 0.76
LIMS3P0CW19 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
LIMS3P0CW19 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIMS3P0CW19 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMS3P0CW19 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC19.78■□□□□ 0.76
LIMS3P0CW19 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC19.78■□□□□ 0.76
LIMS3P0CW19 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMS3P0CW19 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LIMS3P0CW19 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMS3P0CW19 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMS3P0CW19 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.77■□□□□ 0.76
LIMS3P0CW19 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.77■□□□□ 0.76
LIMS3P0CW19 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC19.77■□□□□ 0.76
LIMS3P0CW19 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
LIMS3P0CW19 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC19.77■□□□□ 0.76
LIMS3P0CW19 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC19.77■□□□□ 0.76
LIMS3P0CW19 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC19.77■□□□□ 0.76
LIMS3P0CW19 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.77■□□□□ 0.75
LIMS3P0CW19 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
LIMS3P0CW19 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
LIMS3P0CW19 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMS3P0CW19 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
LIMS3P0CW19 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
LIMS3P0CW19 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.76■□□□□ 0.75
LIMS3P0CW19 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIMS3P0CW19 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIMS3P0CW19 AC026310.3-201ENST00000625186 2373 ntBASIC19.76■□□□□ 0.75
LIMS3P0CW19 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMS3P0CW19 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
LIMS3P0CW19 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC19.76■□□□□ 0.75
LIMS3P0CW19 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC19.76■□□□□ 0.75
LIMS3P0CW19 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC19.76■□□□□ 0.75
LIMS3P0CW19 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMS3P0CW19 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
LIMS3P0CW19 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC19.76■□□□□ 0.75
LIMS3P0CW19 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.76■□□□□ 0.75
LIMS3P0CW19 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMS3P0CW19 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMS3P0CW19 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.75■□□□□ 0.75
LIMS3P0CW19 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMS3P0CW19 AC022616.5-201ENST00000518796 181 ntBASIC19.75■□□□□ 0.75
LIMS3P0CW19 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMS3P0CW19 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC19.75■□□□□ 0.75
LIMS3P0CW19 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMS3P0CW19 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMS3P0CW19 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
LIMS3P0CW19 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMS3P0CW19 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.75■□□□□ 0.75
LIMS3P0CW19 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMS3P0CW19 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
LIMS3P0CW19 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMS3P0CW19 AF131216.4-201ENST00000638924 1588 ntBASIC19.74■□□□□ 0.75
LIMS3P0CW19 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
LIMS3P0CW19 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMS3P0CW19 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMS3P0CW19 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC19.74■□□□□ 0.75
LIMS3P0CW19 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC19.74■□□□□ 0.75
LIMS3P0CW19 AC129492.7-201ENST00000622992 756 ntBASIC19.74■□□□□ 0.75
LIMS3P0CW19 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
LIMS3P0CW19 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LIMS3P0CW19 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMS3P0CW19 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LIMS3P0CW19 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMS3P0CW19 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMS3P0CW19 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.73■□□□□ 0.75
LIMS3P0CW19 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIMS3P0CW19 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC19.73■□□□□ 0.75
LIMS3P0CW19 AC004448.1-201ENST00000458332 883 ntBASIC19.73■□□□□ 0.75
LIMS3P0CW19 AC019171.1-201ENST00000601251 1056 ntBASIC19.73■□□□□ 0.75
LIMS3P0CW19 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMS3P0CW19 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.73■□□□□ 0.75
LIMS3P0CW19 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMS3P0CW19 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMS3P0CW19 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMS3P0CW19 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.72■□□□□ 0.75
LIMS3P0CW19 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.72■□□□□ 0.75
LIMS3P0CW19 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMS3P0CW19 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMS3P0CW19 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMS3P0CW19 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC19.72■□□□□ 0.75
LIMS3P0CW19 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC19.72■□□□□ 0.75
LIMS3P0CW19 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMS3P0CW19 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMS3P0CW19 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
LIMS3P0CW19 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.71■□□□□ 0.75
LIMS3P0CW19 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMS3P0CW19 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
LIMS3P0CW19 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC19.71■□□□□ 0.75
LIMS3P0CW19 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMS3P0CW19 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC19.71■□□□□ 0.75
LIMS3P0CW19 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMS3P0CW19 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMS3P0CW19 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMS3P0CW19 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIMS3P0CW19 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMS3P0CW19 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.71■□□□□ 0.75
LIMS3P0CW19 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms