Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC22.7■■□□□ 1.22
PDGFBP01127 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
PDGFBP01127 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
PDGFBP01127 LSR-205ENST00000427250 1606 ntTSL 2 BASIC22.69■■□□□ 1.22
PDGFBP01127 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PDGFBP01127 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
PDGFBP01127 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PDGFBP01127 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PDGFBP01127 GUSBP6-202ENST00000438529 1198 ntBASIC22.69■■□□□ 1.22
PDGFBP01127 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC22.69■■□□□ 1.22
PDGFBP01127 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
PDGFBP01127 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PDGFBP01127 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC22.68■■□□□ 1.22
PDGFBP01127 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PDGFBP01127 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
PDGFBP01127 ALDH1A3-203ENST00000557963 1670 ntBASIC22.68■■□□□ 1.22
PDGFBP01127 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
PDGFBP01127 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.22
PDGFBP01127 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
PDGFBP01127 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PDGFBP01127 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC22.68■■□□□ 1.22
PDGFBP01127 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
PDGFBP01127 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
PDGFBP01127 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
PDGFBP01127 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC22.68■■□□□ 1.22
PDGFBP01127 FAM201B-201ENST00000458407 597 ntBASIC22.68■■□□□ 1.22
PDGFBP01127 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC22.68■■□□□ 1.22
PDGFBP01127 MDK-213ENST00000617138 635 ntTSL 2 BASIC22.68■■□□□ 1.22
PDGFBP01127 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
PDGFBP01127 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC22.68■■□□□ 1.22
PDGFBP01127 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
PDGFBP01127 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
PDGFBP01127 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PDGFBP01127 RARA-203ENST00000394086 2008 ntTSL 2 BASIC22.67■■□□□ 1.22
PDGFBP01127 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
PDGFBP01127 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
PDGFBP01127 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
PDGFBP01127 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
PDGFBP01127 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
PDGFBP01127 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
PDGFBP01127 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC22.67■■□□□ 1.22
PDGFBP01127 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC22.67■■□□□ 1.22
PDGFBP01127 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC22.67■■□□□ 1.22
PDGFBP01127 MAZ-216ENST00000616501 991 ntTSL 5 BASIC22.67■■□□□ 1.22
PDGFBP01127 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC22.67■■□□□ 1.22
PDGFBP01127 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC22.67■■□□□ 1.22
PDGFBP01127 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
PDGFBP01127 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC22.66■■□□□ 1.22
PDGFBP01127 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PDGFBP01127 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC22.66■■□□□ 1.22
PDGFBP01127 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PDGFBP01127 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
PDGFBP01127 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC22.66■■□□□ 1.22
PDGFBP01127 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC22.66■■□□□ 1.22
PDGFBP01127 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC22.66■■□□□ 1.22
PDGFBP01127 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
PDGFBP01127 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PDGFBP01127 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PDGFBP01127 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
PDGFBP01127 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PDGFBP01127 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PDGFBP01127 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
PDGFBP01127 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC22.65■■□□□ 1.22
PDGFBP01127 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
PDGFBP01127 KRT18P11-201ENST00000435214 1283 ntBASIC22.65■■□□□ 1.22
PDGFBP01127 MFSD11-216ENST00000590393 1141 ntBASIC22.65■■□□□ 1.22
PDGFBP01127 AC087239.1-201ENST00000622671 572 ntBASIC22.65■■□□□ 1.22
PDGFBP01127 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
PDGFBP01127 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
PDGFBP01127 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC22.64■■□□□ 1.22
PDGFBP01127 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC22.64■■□□□ 1.22
PDGFBP01127 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
PDGFBP01127 AC069152.1-201ENST00000438030 544 ntBASIC22.64■■□□□ 1.21
PDGFBP01127 TESC-206ENST00000541210 936 ntTSL 3 BASIC22.64■■□□□ 1.21
PDGFBP01127 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC22.64■■□□□ 1.21
PDGFBP01127 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
PDGFBP01127 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
PDGFBP01127 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC22.64■■□□□ 1.21
PDGFBP01127 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
PDGFBP01127 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
PDGFBP01127 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
PDGFBP01127 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PDGFBP01127 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
PDGFBP01127 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
PDGFBP01127 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
PDGFBP01127 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
PDGFBP01127 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
PDGFBP01127 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PDGFBP01127 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
PDGFBP01127 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC22.63■■□□□ 1.21
PDGFBP01127 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC22.63■■□□□ 1.21
PDGFBP01127 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC22.63■■□□□ 1.21
PDGFBP01127 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC22.63■■□□□ 1.21
PDGFBP01127 SLC7A5P2-201ENST00000553010 536 ntBASIC22.63■■□□□ 1.21
PDGFBP01127 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC22.63■■□□□ 1.21
PDGFBP01127 TFG-210ENST00000620299 1289 ntTSL 5 BASIC22.63■■□□□ 1.21
PDGFBP01127 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC22.63■■□□□ 1.21
PDGFBP01127 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PDGFBP01127 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
PDGFBP01127 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms