Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
CACNA1FO60840 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC28.31■■■□□ 2.12
CACNA1FO60840 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC28.3■■■□□ 2.12
CACNA1FO60840 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC28.3■■■□□ 2.12
CACNA1FO60840 AL353803.4-201ENST00000565882 1934 ntBASIC28.3■■■□□ 2.12
CACNA1FO60840 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC28.3■■■□□ 2.12
CACNA1FO60840 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC28.3■■■□□ 2.12
CACNA1FO60840 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC28.3■■■□□ 2.12
CACNA1FO60840 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC28.29■■■□□ 2.12
CACNA1FO60840 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC28.29■■■□□ 2.12
CACNA1FO60840 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC28.29■■■□□ 2.12
CACNA1FO60840 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
CACNA1FO60840 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC28.29■■■□□ 2.12
CACNA1FO60840 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
CACNA1FO60840 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC28.28■■■□□ 2.12
CACNA1FO60840 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
CACNA1FO60840 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
CACNA1FO60840 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
CACNA1FO60840 AC099791.1-201ENST00000416440 715 ntBASIC28.28■■■□□ 2.12
CACNA1FO60840 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
CACNA1FO60840 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
CACNA1FO60840 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC28.28■■■□□ 2.12
CACNA1FO60840 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC28.28■■■□□ 2.12
CACNA1FO60840 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
CACNA1FO60840 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC28.28■■■□□ 2.12
CACNA1FO60840 AC004687.1-201ENST00000579003 1625 ntBASIC28.28■■■□□ 2.12
CACNA1FO60840 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC28.28■■■□□ 2.12
CACNA1FO60840 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC28.28■■■□□ 2.12
CACNA1FO60840 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC28.28■■■□□ 2.12
CACNA1FO60840 AL355001.2-201ENST00000620617 1191 ntBASIC28.28■■■□□ 2.12
CACNA1FO60840 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
CACNA1FO60840 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC28.27■■■□□ 2.12
CACNA1FO60840 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC28.27■■■□□ 2.12
CACNA1FO60840 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CACNA1FO60840 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
CACNA1FO60840 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC28.27■■■□□ 2.12
CACNA1FO60840 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC28.27■■■□□ 2.12
CACNA1FO60840 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CACNA1FO60840 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC28.27■■■□□ 2.12
CACNA1FO60840 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC28.26■■■□□ 2.12
CACNA1FO60840 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC28.26■■■□□ 2.11
CACNA1FO60840 AC233992.3-201ENST00000607491 485 ntBASIC28.26■■■□□ 2.11
CACNA1FO60840 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
CACNA1FO60840 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
CACNA1FO60840 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
CACNA1FO60840 AC142381.2-201ENST00000566120 298 ntBASIC28.26■■■□□ 2.11
CACNA1FO60840 MAG-206ENST00000597035 542 ntTSL 4 BASIC28.26■■■□□ 2.11
CACNA1FO60840 AL136967.2-201ENST00000623968 743 ntBASIC28.26■■■□□ 2.11
CACNA1FO60840 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC28.25■■■□□ 2.11
CACNA1FO60840 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
CACNA1FO60840 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
CACNA1FO60840 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
CACNA1FO60840 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC28.25■■■□□ 2.11
CACNA1FO60840 NFE2L3P1-201ENST00000588207 1959 ntBASIC28.25■■■□□ 2.11
CACNA1FO60840 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC28.24■■■□□ 2.11
CACNA1FO60840 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
CACNA1FO60840 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC28.24■■■□□ 2.11
CACNA1FO60840 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
CACNA1FO60840 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC28.23■■■□□ 2.11
CACNA1FO60840 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC28.23■■■□□ 2.11
CACNA1FO60840 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
CACNA1FO60840 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
CACNA1FO60840 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC28.23■■■□□ 2.11
CACNA1FO60840 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC28.23■■■□□ 2.11
CACNA1FO60840 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC28.23■■■□□ 2.11
CACNA1FO60840 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC28.22■■■□□ 2.11
CACNA1FO60840 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
CACNA1FO60840 AICDA-202ENST00000537228 667 ntTSL 5 BASIC28.22■■■□□ 2.11
CACNA1FO60840 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC28.22■■■□□ 2.11
CACNA1FO60840 AC005837.3-201ENST00000612163 286 ntBASIC28.22■■■□□ 2.11
CACNA1FO60840 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
CACNA1FO60840 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC28.22■■■□□ 2.11
CACNA1FO60840 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC28.22■■■□□ 2.11
CACNA1FO60840 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
CACNA1FO60840 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
CACNA1FO60840 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
CACNA1FO60840 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC28.21■■■□□ 2.11
CACNA1FO60840 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC28.21■■■□□ 2.11
CACNA1FO60840 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
CACNA1FO60840 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC28.21■■■□□ 2.11
CACNA1FO60840 ZNRF2P3-201ENST00000424200 374 ntBASIC28.21■■■□□ 2.11
CACNA1FO60840 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC28.21■■■□□ 2.11
CACNA1FO60840 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC28.21■■■□□ 2.11
CACNA1FO60840 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
CACNA1FO60840 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
CACNA1FO60840 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.11
CACNA1FO60840 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
CACNA1FO60840 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
CACNA1FO60840 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
CACNA1FO60840 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.1
CACNA1FO60840 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC28.2■■■□□ 2.1
CACNA1FO60840 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
CACNA1FO60840 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC28.2■■■□□ 2.1
CACNA1FO60840 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC28.2■■■□□ 2.1
CACNA1FO60840 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
CACNA1FO60840 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
CACNA1FO60840 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
CACNA1FO60840 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC28.2■■■□□ 2.1
CACNA1FO60840 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
CACNA1FO60840 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms