Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SDCBPO00560 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC18.84■□□□□ 0.61
SDCBPO00560 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
SDCBPO00560 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.84■□□□□ 0.61
SDCBPO00560 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SDCBPO00560 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SDCBPO00560 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC18.84■□□□□ 0.61
SDCBPO00560 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
SDCBPO00560 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SDCBPO00560 AF131216.4-201ENST00000638924 1588 ntBASIC18.84■□□□□ 0.61
SDCBPO00560 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SDCBPO00560 AC242852.2-201ENST00000615738 1807 ntBASIC18.84■□□□□ 0.61
SDCBPO00560 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SDCBPO00560 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SDCBPO00560 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
SDCBPO00560 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC18.83■□□□□ 0.61
SDCBPO00560 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
SDCBPO00560 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC18.83■□□□□ 0.61
SDCBPO00560 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SDCBPO00560 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC18.83■□□□□ 0.6
SDCBPO00560 AC103724.3-201ENST00000564481 992 ntBASIC18.83■□□□□ 0.6
SDCBPO00560 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
SDCBPO00560 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SDCBPO00560 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.6
SDCBPO00560 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.83■□□□□ 0.6
SDCBPO00560 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SDCBPO00560 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC18.82■□□□□ 0.6
SDCBPO00560 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC18.82■□□□□ 0.6
SDCBPO00560 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDCBPO00560 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDCBPO00560 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC18.82■□□□□ 0.6
SDCBPO00560 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDCBPO00560 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC18.82■□□□□ 0.6
SDCBPO00560 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC18.82■□□□□ 0.6
SDCBPO00560 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC18.82■□□□□ 0.6
SDCBPO00560 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDCBPO00560 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDCBPO00560 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDCBPO00560 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDCBPO00560 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDCBPO00560 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDCBPO00560 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SDCBPO00560 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC18.81■□□□□ 0.6
SDCBPO00560 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SDCBPO00560 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SDCBPO00560 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SDCBPO00560 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SDCBPO00560 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SDCBPO00560 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SDCBPO00560 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SDCBPO00560 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SDCBPO00560 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SDCBPO00560 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SDCBPO00560 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC18.8■□□□□ 0.6
SDCBPO00560 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SDCBPO00560 ESRRAP2-201ENST00000418437 1549 ntBASIC18.8■□□□□ 0.6
SDCBPO00560 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SDCBPO00560 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SDCBPO00560 AC079630.1-202ENST00000618127 1840 ntBASIC18.8■□□□□ 0.6
SDCBPO00560 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SDCBPO00560 AL031848.2-201ENST00000607670 837 ntBASIC18.8■□□□□ 0.6
SDCBPO00560 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SDCBPO00560 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SDCBPO00560 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC18.8■□□□□ 0.6
SDCBPO00560 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SDCBPO00560 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SDCBPO00560 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC18.79■□□□□ 0.6
SDCBPO00560 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SDCBPO00560 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SDCBPO00560 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC18.79■□□□□ 0.6
SDCBPO00560 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC18.79■□□□□ 0.6
SDCBPO00560 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC18.79■□□□□ 0.6
SDCBPO00560 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SDCBPO00560 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SDCBPO00560 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SDCBPO00560 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SDCBPO00560 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
SDCBPO00560 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC18.79■□□□□ 0.6
SDCBPO00560 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SDCBPO00560 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SDCBPO00560 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SDCBPO00560 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SDCBPO00560 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SDCBPO00560 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SDCBPO00560 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC18.78■□□□□ 0.6
SDCBPO00560 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SDCBPO00560 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SDCBPO00560 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC18.78■□□□□ 0.6
SDCBPO00560 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SDCBPO00560 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC18.78■□□□□ 0.6
SDCBPO00560 TK2-216ENST00000564917 1156 ntTSL 3 BASIC18.78■□□□□ 0.6
SDCBPO00560 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SDCBPO00560 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SDCBPO00560 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SDCBPO00560 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
SDCBPO00560 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SDCBPO00560 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC18.77■□□□□ 0.6
SDCBPO00560 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC18.77■□□□□ 0.6
SDCBPO00560 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SDCBPO00560 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms