Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
UPK1AO00322 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
UPK1AO00322 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
UPK1AO00322 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
UPK1AO00322 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
UPK1AO00322 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.12■□□□□ 0.97
UPK1AO00322 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
UPK1AO00322 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
UPK1AO00322 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
UPK1AO00322 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
UPK1AO00322 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.12■□□□□ 0.97
UPK1AO00322 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
UPK1AO00322 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.12■□□□□ 0.97
UPK1AO00322 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
UPK1AO00322 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
UPK1AO00322 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
UPK1AO00322 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
UPK1AO00322 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
UPK1AO00322 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
UPK1AO00322 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
UPK1AO00322 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
UPK1AO00322 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
UPK1AO00322 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.11■□□□□ 0.97
UPK1AO00322 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
UPK1AO00322 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.11■□□□□ 0.97
UPK1AO00322 AL035685.1-201ENST00000636663 812 ntBASIC21.11■□□□□ 0.97
UPK1AO00322 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
UPK1AO00322 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.11■□□□□ 0.97
UPK1AO00322 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
UPK1AO00322 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
UPK1AO00322 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.1■□□□□ 0.97
UPK1AO00322 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
UPK1AO00322 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
UPK1AO00322 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.1■□□□□ 0.97
UPK1AO00322 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
UPK1AO00322 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
UPK1AO00322 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
UPK1AO00322 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.09■□□□□ 0.97
UPK1AO00322 AC005703.6-201ENST00000623265 1329 ntBASIC21.09■□□□□ 0.97
UPK1AO00322 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.09■□□□□ 0.97
UPK1AO00322 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
UPK1AO00322 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
UPK1AO00322 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
UPK1AO00322 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
UPK1AO00322 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
UPK1AO00322 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.09■□□□□ 0.97
UPK1AO00322 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.08■□□□□ 0.97
UPK1AO00322 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.08■□□□□ 0.97
UPK1AO00322 TSPY9P-201ENST00000440215 945 ntBASIC21.08■□□□□ 0.97
UPK1AO00322 TSPY11P-201ENST00000442607 1045 ntBASIC21.08■□□□□ 0.97
UPK1AO00322 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.08■□□□□ 0.97
UPK1AO00322 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.08■□□□□ 0.97
UPK1AO00322 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.08■□□□□ 0.97
UPK1AO00322 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
UPK1AO00322 MTDHP2-201ENST00000601468 714 ntBASIC21.08■□□□□ 0.97
UPK1AO00322 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
UPK1AO00322 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
UPK1AO00322 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
UPK1AO00322 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
UPK1AO00322 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
UPK1AO00322 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
UPK1AO00322 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
UPK1AO00322 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
UPK1AO00322 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
UPK1AO00322 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
UPK1AO00322 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
UPK1AO00322 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
UPK1AO00322 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
UPK1AO00322 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.07■□□□□ 0.96
UPK1AO00322 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
UPK1AO00322 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
UPK1AO00322 AL024507.2-201ENST00000606070 2574 ntBASIC21.06■□□□□ 0.96
UPK1AO00322 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.06■□□□□ 0.96
UPK1AO00322 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
UPK1AO00322 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
UPK1AO00322 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
UPK1AO00322 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.06■□□□□ 0.96
UPK1AO00322 AC010997.5-201ENST00000609182 354 ntBASIC21.06■□□□□ 0.96
UPK1AO00322 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
UPK1AO00322 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
UPK1AO00322 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
UPK1AO00322 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.05■□□□□ 0.96
UPK1AO00322 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.05■□□□□ 0.96
UPK1AO00322 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.05■□□□□ 0.96
UPK1AO00322 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.05■□□□□ 0.96
UPK1AO00322 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
UPK1AO00322 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
UPK1AO00322 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
UPK1AO00322 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.05■□□□□ 0.96
UPK1AO00322 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.05■□□□□ 0.96
UPK1AO00322 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
UPK1AO00322 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
UPK1AO00322 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
UPK1AO00322 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.05■□□□□ 0.96
UPK1AO00322 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
UPK1AO00322 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.05■□□□□ 0.96
UPK1AO00322 AC242852.2-201ENST00000615738 1807 ntBASIC21.05■□□□□ 0.96
UPK1AO00322 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
UPK1AO00322 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.05■□□□□ 0.96
UPK1AO00322 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms