Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TMX2-CTNND1H3BSU7 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TMX2-CTNND1H3BSU7 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.73■■□□□ 1.07
TMX2-CTNND1H3BSU7 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TMX2-CTNND1H3BSU7 AC087623.3-201ENST00000607047 1098 ntBASIC21.73■■□□□ 1.07
TMX2-CTNND1H3BSU7 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TMX2-CTNND1H3BSU7 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TMX2-CTNND1H3BSU7 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TMX2-CTNND1H3BSU7 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.73■■□□□ 1.07
TMX2-CTNND1H3BSU7 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.73■■□□□ 1.07
TMX2-CTNND1H3BSU7 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TMX2-CTNND1H3BSU7 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TMX2-CTNND1H3BSU7 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.73■■□□□ 1.07
TMX2-CTNND1H3BSU7 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.72■■□□□ 1.07
TMX2-CTNND1H3BSU7 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TMX2-CTNND1H3BSU7 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TMX2-CTNND1H3BSU7 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.72■■□□□ 1.07
TMX2-CTNND1H3BSU7 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.72■■□□□ 1.07
TMX2-CTNND1H3BSU7 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TMX2-CTNND1H3BSU7 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TMX2-CTNND1H3BSU7 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
TMX2-CTNND1H3BSU7 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TMX2-CTNND1H3BSU7 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TMX2-CTNND1H3BSU7 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TMX2-CTNND1H3BSU7 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
TMX2-CTNND1H3BSU7 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
TMX2-CTNND1H3BSU7 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TMX2-CTNND1H3BSU7 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TMX2-CTNND1H3BSU7 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
TMX2-CTNND1H3BSU7 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
TMX2-CTNND1H3BSU7 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
TMX2-CTNND1H3BSU7 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TMX2-CTNND1H3BSU7 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.71■■□□□ 1.07
TMX2-CTNND1H3BSU7 AL162430.1-201ENST00000480705 870 ntBASIC21.71■■□□□ 1.07
TMX2-CTNND1H3BSU7 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
TMX2-CTNND1H3BSU7 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
TMX2-CTNND1H3BSU7 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.71■■□□□ 1.07
TMX2-CTNND1H3BSU7 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
TMX2-CTNND1H3BSU7 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TMX2-CTNND1H3BSU7 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TMX2-CTNND1H3BSU7 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
TMX2-CTNND1H3BSU7 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.7■■□□□ 1.06
TMX2-CTNND1H3BSU7 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.7■■□□□ 1.06
TMX2-CTNND1H3BSU7 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.7■■□□□ 1.06
TMX2-CTNND1H3BSU7 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.7■■□□□ 1.06
TMX2-CTNND1H3BSU7 DUSP8P5-201ENST00000422884 1815 ntBASIC21.7■■□□□ 1.06
TMX2-CTNND1H3BSU7 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TMX2-CTNND1H3BSU7 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TMX2-CTNND1H3BSU7 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TMX2-CTNND1H3BSU7 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
TMX2-CTNND1H3BSU7 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TMX2-CTNND1H3BSU7 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TMX2-CTNND1H3BSU7 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
TMX2-CTNND1H3BSU7 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
TMX2-CTNND1H3BSU7 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
TMX2-CTNND1H3BSU7 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TMX2-CTNND1H3BSU7 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
TMX2-CTNND1H3BSU7 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.7■■□□□ 1.06
TMX2-CTNND1H3BSU7 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.7■■□□□ 1.06
TMX2-CTNND1H3BSU7 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.69■■□□□ 1.06
TMX2-CTNND1H3BSU7 AC006455.2-201ENST00000429931 906 ntBASIC21.69■■□□□ 1.06
TMX2-CTNND1H3BSU7 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC21.69■■□□□ 1.06
TMX2-CTNND1H3BSU7 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.69■■□□□ 1.06
TMX2-CTNND1H3BSU7 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21.69■■□□□ 1.06
TMX2-CTNND1H3BSU7 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.69■■□□□ 1.06
TMX2-CTNND1H3BSU7 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.69■■□□□ 1.06
TMX2-CTNND1H3BSU7 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.69■■□□□ 1.06
TMX2-CTNND1H3BSU7 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.69■■□□□ 1.06
TMX2-CTNND1H3BSU7 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.69■■□□□ 1.06
TMX2-CTNND1H3BSU7 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
TMX2-CTNND1H3BSU7 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
TMX2-CTNND1H3BSU7 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.68■■□□□ 1.06
TMX2-CTNND1H3BSU7 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TMX2-CTNND1H3BSU7 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
TMX2-CTNND1H3BSU7 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TMX2-CTNND1H3BSU7 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC21.68■■□□□ 1.06
TMX2-CTNND1H3BSU7 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
TMX2-CTNND1H3BSU7 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
TMX2-CTNND1H3BSU7 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.68■■□□□ 1.06
TMX2-CTNND1H3BSU7 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
TMX2-CTNND1H3BSU7 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
TMX2-CTNND1H3BSU7 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
TMX2-CTNND1H3BSU7 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TMX2-CTNND1H3BSU7 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.67■■□□□ 1.06
TMX2-CTNND1H3BSU7 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
TMX2-CTNND1H3BSU7 AC126544.1-201ENST00000580842 1059 ntBASIC21.67■■□□□ 1.06
TMX2-CTNND1H3BSU7 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TMX2-CTNND1H3BSU7 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.67■■□□□ 1.06
TMX2-CTNND1H3BSU7 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TMX2-CTNND1H3BSU7 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TMX2-CTNND1H3BSU7 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
TMX2-CTNND1H3BSU7 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.66■■□□□ 1.06
TMX2-CTNND1H3BSU7 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
TMX2-CTNND1H3BSU7 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TMX2-CTNND1H3BSU7 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.66■■□□□ 1.06
TMX2-CTNND1H3BSU7 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.66■■□□□ 1.06
TMX2-CTNND1H3BSU7 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC21.66■■□□□ 1.06
TMX2-CTNND1H3BSU7 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.66■■□□□ 1.06
TMX2-CTNND1H3BSU7 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
TMX2-CTNND1H3BSU7 pRNA.6-201ENST00000610482 90 ntBASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms