Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
COL6A6A6NMZ7 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL6A6A6NMZ7 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL6A6A6NMZ7 SLC6A10P-202ENST00000431994 2058 ntBASIC20.28■□□□□ 0.84
COL6A6A6NMZ7 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
COL6A6A6NMZ7 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL6A6A6NMZ7 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.28■□□□□ 0.84
COL6A6A6NMZ7 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC20.28■□□□□ 0.84
COL6A6A6NMZ7 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL6A6A6NMZ7 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
COL6A6A6NMZ7 AC010501.1-201ENST00000606270 1962 ntBASIC20.27■□□□□ 0.84
COL6A6A6NMZ7 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL6A6A6NMZ7 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
COL6A6A6NMZ7 DUX4L16-201ENST00000555130 1264 ntBASIC20.27■□□□□ 0.84
COL6A6A6NMZ7 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.27■□□□□ 0.84
COL6A6A6NMZ7 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.27■□□□□ 0.84
COL6A6A6NMZ7 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.27■□□□□ 0.84
COL6A6A6NMZ7 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.27■□□□□ 0.84
COL6A6A6NMZ7 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC20.27■□□□□ 0.84
COL6A6A6NMZ7 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
COL6A6A6NMZ7 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.27■□□□□ 0.83
COL6A6A6NMZ7 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.27■□□□□ 0.83
COL6A6A6NMZ7 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
COL6A6A6NMZ7 AC098934.4-201ENST00000564127 592 ntBASIC20.27■□□□□ 0.83
COL6A6A6NMZ7 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL6A6A6NMZ7 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL6A6A6NMZ7 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL6A6A6NMZ7 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL6A6A6NMZ7 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.26■□□□□ 0.83
COL6A6A6NMZ7 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.26■□□□□ 0.83
COL6A6A6NMZ7 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL6A6A6NMZ7 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL6A6A6NMZ7 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
COL6A6A6NMZ7 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL6A6A6NMZ7 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.25■□□□□ 0.83
COL6A6A6NMZ7 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL6A6A6NMZ7 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.25■□□□□ 0.83
COL6A6A6NMZ7 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL6A6A6NMZ7 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
COL6A6A6NMZ7 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
COL6A6A6NMZ7 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL6A6A6NMZ7 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL6A6A6NMZ7 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL6A6A6NMZ7 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.25■□□□□ 0.83
COL6A6A6NMZ7 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
COL6A6A6NMZ7 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL6A6A6NMZ7 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL6A6A6NMZ7 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL6A6A6NMZ7 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL6A6A6NMZ7 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.24■□□□□ 0.83
COL6A6A6NMZ7 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL6A6A6NMZ7 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL6A6A6NMZ7 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
COL6A6A6NMZ7 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL6A6A6NMZ7 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
COL6A6A6NMZ7 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.24■□□□□ 0.83
COL6A6A6NMZ7 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20.24■□□□□ 0.83
COL6A6A6NMZ7 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL6A6A6NMZ7 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
COL6A6A6NMZ7 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
COL6A6A6NMZ7 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.23■□□□□ 0.83
COL6A6A6NMZ7 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A6A6NMZ7 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC20.23■□□□□ 0.83
COL6A6A6NMZ7 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A6A6NMZ7 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.23■□□□□ 0.83
COL6A6A6NMZ7 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A6A6NMZ7 RPS2P52-201ENST00000469610 820 ntBASIC20.23■□□□□ 0.83
COL6A6A6NMZ7 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.23■□□□□ 0.83
COL6A6A6NMZ7 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.23■□□□□ 0.83
COL6A6A6NMZ7 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A6A6NMZ7 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A6A6NMZ7 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A6A6NMZ7 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC20.23■□□□□ 0.83
COL6A6A6NMZ7 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A6A6NMZ7 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A6A6NMZ7 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A6A6NMZ7 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.23■□□□□ 0.83
COL6A6A6NMZ7 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A6A6NMZ7 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A6A6NMZ7 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
COL6A6A6NMZ7 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A6A6NMZ7 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A6A6NMZ7 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.22■□□□□ 0.83
COL6A6A6NMZ7 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
COL6A6A6NMZ7 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.22■□□□□ 0.83
COL6A6A6NMZ7 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
COL6A6A6NMZ7 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
COL6A6A6NMZ7 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
COL6A6A6NMZ7 AC231657.2-201ENST00000624556 255 ntBASIC20.22■□□□□ 0.83
COL6A6A6NMZ7 BX005040.4-201ENST00000637145 1518 ntBASIC20.21■□□□□ 0.83
COL6A6A6NMZ7 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.21■□□□□ 0.83
COL6A6A6NMZ7 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A6A6NMZ7 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A6A6NMZ7 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A6A6NMZ7 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A6A6NMZ7 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A6A6NMZ7 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.21■□□□□ 0.83
COL6A6A6NMZ7 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A6A6NMZ7 SHF-206ENST00000560471 2499 ntTSL 5 BASIC20.21■□□□□ 0.83
COL6A6A6NMZ7 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 10 ms