Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 AC021242.3-201ENST00000607598 1377 ntBASIC20.46■□□□□ 0.87
CPSF4LA6NMK7 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.87
CPSF4LA6NMK7 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.87
CPSF4LA6NMK7 AC144652.1-201ENST00000609974 1624 ntBASIC20.45■□□□□ 0.87
CPSF4LA6NMK7 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
CPSF4LA6NMK7 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CPSF4LA6NMK7 PKD1P6-201ENST00000343738 4769 ntBASIC20.45■□□□□ 0.86
CPSF4LA6NMK7 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.45■□□□□ 0.86
CPSF4LA6NMK7 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CPSF4LA6NMK7 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CPSF4LA6NMK7 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CPSF4LA6NMK7 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CPSF4LA6NMK7 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.45■□□□□ 0.86
CPSF4LA6NMK7 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.45■□□□□ 0.86
CPSF4LA6NMK7 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CPSF4LA6NMK7 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CPSF4LA6NMK7 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
CPSF4LA6NMK7 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CPSF4LA6NMK7 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CPSF4LA6NMK7 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CPSF4LA6NMK7 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.45■□□□□ 0.86
CPSF4LA6NMK7 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.44■□□□□ 0.86
CPSF4LA6NMK7 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
CPSF4LA6NMK7 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.44■□□□□ 0.86
CPSF4LA6NMK7 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CPSF4LA6NMK7 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
CPSF4LA6NMK7 LINC00526-201ENST00000581067 1875 ntBASIC20.44■□□□□ 0.86
CPSF4LA6NMK7 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.44■□□□□ 0.86
CPSF4LA6NMK7 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
CPSF4LA6NMK7 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.44■□□□□ 0.86
CPSF4LA6NMK7 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.44■□□□□ 0.86
CPSF4LA6NMK7 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CPSF4LA6NMK7 AC005703.6-201ENST00000623265 1329 ntBASIC20.44■□□□□ 0.86
CPSF4LA6NMK7 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.44■□□□□ 0.86
CPSF4LA6NMK7 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.44■□□□□ 0.86
CPSF4LA6NMK7 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CPSF4LA6NMK7 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CPSF4LA6NMK7 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.43■□□□□ 0.86
CPSF4LA6NMK7 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CPSF4LA6NMK7 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.43■□□□□ 0.86
CPSF4LA6NMK7 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CPSF4LA6NMK7 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CPSF4LA6NMK7 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
CPSF4LA6NMK7 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
CPSF4LA6NMK7 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.43■□□□□ 0.86
CPSF4LA6NMK7 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CPSF4LA6NMK7 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CPSF4LA6NMK7 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
CPSF4LA6NMK7 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CPSF4LA6NMK7 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CPSF4LA6NMK7 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CPSF4LA6NMK7 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CPSF4LA6NMK7 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.43■□□□□ 0.86
CPSF4LA6NMK7 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.42■□□□□ 0.86
CPSF4LA6NMK7 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CPSF4LA6NMK7 ECEL1P1-201ENST00000373592 1742 ntBASIC20.42■□□□□ 0.86
CPSF4LA6NMK7 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
CPSF4LA6NMK7 LINC00565-201ENST00000562710 2331 ntBASIC20.42■□□□□ 0.86
CPSF4LA6NMK7 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CPSF4LA6NMK7 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CPSF4LA6NMK7 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
CPSF4LA6NMK7 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
CPSF4LA6NMK7 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.42■□□□□ 0.86
CPSF4LA6NMK7 ESRRAP2-201ENST00000418437 1549 ntBASIC20.42■□□□□ 0.86
CPSF4LA6NMK7 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CPSF4LA6NMK7 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CPSF4LA6NMK7 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CPSF4LA6NMK7 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CPSF4LA6NMK7 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CPSF4LA6NMK7 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CPSF4LA6NMK7 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CPSF4LA6NMK7 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CPSF4LA6NMK7 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CPSF4LA6NMK7 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.41■□□□□ 0.86
CPSF4LA6NMK7 MIR6722-201ENST00000617286 78 ntBASIC20.41■□□□□ 0.86
CPSF4LA6NMK7 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
CPSF4LA6NMK7 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CPSF4LA6NMK7 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.41■□□□□ 0.86
CPSF4LA6NMK7 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CPSF4LA6NMK7 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.41■□□□□ 0.86
CPSF4LA6NMK7 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
CPSF4LA6NMK7 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CPSF4LA6NMK7 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CPSF4LA6NMK7 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CPSF4LA6NMK7 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CPSF4LA6NMK7 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CPSF4LA6NMK7 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CPSF4LA6NMK7 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.4■□□□□ 0.86
CPSF4LA6NMK7 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.4■□□□□ 0.86
CPSF4LA6NMK7 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CPSF4LA6NMK7 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CPSF4LA6NMK7 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.4■□□□□ 0.86
CPSF4LA6NMK7 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.4■□□□□ 0.86
CPSF4LA6NMK7 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.4■□□□□ 0.86
CPSF4LA6NMK7 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.86
CPSF4LA6NMK7 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CPSF4LA6NMK7 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.39■□□□□ 0.86
CPSF4LA6NMK7 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CPSF4LA6NMK7 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CPSF4LA6NMK7 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms