Protein–RNA interactions for Protein: A5YKK6

CNOT1, CCR4-NOT transcription complex subunit 1, humanhuman

Known RBP Predictions only

Length 2,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1A5YKK6 ITM2C-210ENST00000620962 501 ntBASIC21.55■■□□□ 1.04
CNOT1A5YKK6 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
CNOT1A5YKK6 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
CNOT1A5YKK6 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CNOT1A5YKK6 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CNOT1A5YKK6 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CNOT1A5YKK6 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CNOT1A5YKK6 OR2I1P-207ENST00000453522 948 ntBASIC21.54■■□□□ 1.04
CNOT1A5YKK6 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC21.54■■□□□ 1.04
CNOT1A5YKK6 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.54■■□□□ 1.04
CNOT1A5YKK6 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CNOT1A5YKK6 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CNOT1A5YKK6 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC21.54■■□□□ 1.04
CNOT1A5YKK6 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
CNOT1A5YKK6 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.54■■□□□ 1.04
CNOT1A5YKK6 DUX4L16-201ENST00000555130 1264 ntBASIC21.54■■□□□ 1.04
CNOT1A5YKK6 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
CNOT1A5YKK6 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
CNOT1A5YKK6 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
CNOT1A5YKK6 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.53■■□□□ 1.04
CNOT1A5YKK6 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC21.53■■□□□ 1.04
CNOT1A5YKK6 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CNOT1A5YKK6 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CNOT1A5YKK6 TMEM202-AS1-202ENST00000565181 2325 ntBASIC21.53■■□□□ 1.04
CNOT1A5YKK6 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.53■■□□□ 1.04
CNOT1A5YKK6 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CNOT1A5YKK6 TSPY6P-201ENST00000448518 926 ntBASIC21.53■■□□□ 1.04
CNOT1A5YKK6 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
CNOT1A5YKK6 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CNOT1A5YKK6 BX005040.4-201ENST00000637145 1518 ntBASIC21.53■■□□□ 1.04
CNOT1A5YKK6 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CNOT1A5YKK6 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC21.52■■□□□ 1.04
CNOT1A5YKK6 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.52■■□□□ 1.04
CNOT1A5YKK6 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.52■■□□□ 1.04
CNOT1A5YKK6 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC21.52■■□□□ 1.04
CNOT1A5YKK6 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.52■■□□□ 1.04
CNOT1A5YKK6 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CNOT1A5YKK6 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC21.52■■□□□ 1.04
CNOT1A5YKK6 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CNOT1A5YKK6 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CNOT1A5YKK6 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
CNOT1A5YKK6 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
CNOT1A5YKK6 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
CNOT1A5YKK6 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.52■■□□□ 1.04
CNOT1A5YKK6 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC21.52■■□□□ 1.04
CNOT1A5YKK6 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21.52■■□□□ 1.04
CNOT1A5YKK6 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.03
CNOT1A5YKK6 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.52■■□□□ 1.03
CNOT1A5YKK6 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
CNOT1A5YKK6 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CNOT1A5YKK6 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CNOT1A5YKK6 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CNOT1A5YKK6 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC21.51■■□□□ 1.03
CNOT1A5YKK6 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CNOT1A5YKK6 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CNOT1A5YKK6 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CNOT1A5YKK6 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CNOT1A5YKK6 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.51■■□□□ 1.03
CNOT1A5YKK6 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CNOT1A5YKK6 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
CNOT1A5YKK6 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
CNOT1A5YKK6 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CNOT1A5YKK6 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CNOT1A5YKK6 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CNOT1A5YKK6 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CNOT1A5YKK6 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
CNOT1A5YKK6 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CNOT1A5YKK6 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CNOT1A5YKK6 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CNOT1A5YKK6 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.5■■□□□ 1.03
CNOT1A5YKK6 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
CNOT1A5YKK6 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CNOT1A5YKK6 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.49■■□□□ 1.03
CNOT1A5YKK6 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CNOT1A5YKK6 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CNOT1A5YKK6 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CNOT1A5YKK6 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CNOT1A5YKK6 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.49■■□□□ 1.03
CNOT1A5YKK6 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC21.49■■□□□ 1.03
CNOT1A5YKK6 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CNOT1A5YKK6 CNN2P6-201ENST00000439038 900 ntBASIC21.48■■□□□ 1.03
CNOT1A5YKK6 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CNOT1A5YKK6 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
CNOT1A5YKK6 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.48■■□□□ 1.03
CNOT1A5YKK6 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.48■■□□□ 1.03
CNOT1A5YKK6 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CNOT1A5YKK6 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CNOT1A5YKK6 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CNOT1A5YKK6 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.48■■□□□ 1.03
CNOT1A5YKK6 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
CNOT1A5YKK6 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.48■■□□□ 1.03
CNOT1A5YKK6 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
CNOT1A5YKK6 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC21.47■■□□□ 1.03
CNOT1A5YKK6 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
CNOT1A5YKK6 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CNOT1A5YKK6 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CNOT1A5YKK6 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
CNOT1A5YKK6 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CNOT1A5YKK6 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CNOT1A5YKK6 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms