Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 DPY19L2P2-205ENST00000439473 3994 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 MAP7D2-202ENST00000379651 3930 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 DLX4-206ENST00000611342 1662 ntBASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 CACNB1-202ENST00000394303 3742 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 POM121L14P-201ENST00000406100 1558 ntBASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 TRIM37-201ENST00000262294 4330 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 ZNF106-205ENST00000565611 5081 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 KRT8P29-201ENST00000420409 1371 ntBASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 MSH2-206ENST00000543555 3024 ntTSL 2 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 ZBTB42-201ENST00000342537 3800 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 AL357373.1-201ENST00000394974 322 ntBASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 SNORA50C-201ENST00000408535 133 ntBASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 HMGA1P1-201ENST00000415560 1062 ntBASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 PDIA3P2-201ENST00000428073 158 ntBASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 RGS5-214ENST00000429865 754 ntTSL 3 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 SERBP1P2-201ENST00000436888 1164 ntBASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 AL645933.1-201ENST00000440087 609 ntBASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 AC242376.1-201ENST00000559033 726 ntBASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 EID1-202ENST00000560490 584 ntTSL 3 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 SNORA50.1-201ENST00000628590 135 ntBASIC11.46□□□□□ -0.57
PDLIM3Q53GG5 CNKSR2-207ENST00000543067 4355 ntTSL 2 BASIC11.46□□□□□ -0.58
PDLIM3Q53GG5 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
PDLIM3Q53GG5 SEC31A-205ENST00000395310 4259 ntAPPRIS P4 TSL 1 (best) BASIC11.46□□□□□ -0.58
PDLIM3Q53GG5 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
PDLIM3Q53GG5 ITPRIPL1-204ENST00000439118 1946 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
PDLIM3Q53GG5 CYP2J2-201ENST00000371204 1896 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
PDLIM3Q53GG5 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC11.46□□□□□ -0.58
PDLIM3Q53GG5 GSTM3-201ENST00000256594 4046 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
PDLIM3Q53GG5 DMTF1-202ENST00000394703 4038 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
PDLIM3Q53GG5 AC010970.1-201ENST00000445125 1848 ntBASIC11.46□□□□□ -0.58
PDLIM3Q53GG5 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC11.46□□□□□ -0.58
PDLIM3Q53GG5 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC11.46□□□□□ -0.58
PDLIM3Q53GG5 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
PDLIM3Q53GG5 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
PDLIM3Q53GG5 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC11.46□□□□□ -0.58
PDLIM3Q53GG5 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
PDLIM3Q53GG5 ZNF646-201ENST00000300850 6892 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.58
PDLIM3Q53GG5 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC11.46□□□□□ -0.58
PDLIM3Q53GG5 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC11.46□□□□□ -0.58
PDLIM3Q53GG5 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC11.46□□□□□ -0.58
PDLIM3Q53GG5 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 EHD1-201ENST00000320631 4551 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 Z98257.2-202ENST00000641138 1548 ntBASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 FN1-202ENST00000336916 8435 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 GALNT7-201ENST00000265000 4307 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 JDP2-203ENST00000435893 5401 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 TRUB2-201ENST00000372890 5719 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 POLE-201ENST00000320574 7840 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 RPS6KC1-209ENST00000615329 4022 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
PDLIM3Q53GG5 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms