Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SLC6A9-205ENST00000372310 3130 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
HMGB1P09429 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
HMGB1P09429 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
HMGB1P09429 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
HMGB1P09429 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
HMGB1P09429 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
HMGB1P09429 ZDHHC11-201ENST00000283441 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
HMGB1P09429 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC16.08■□□□□ 0.16
HMGB1P09429 PAM-207ENST00000455264 2898 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HMGB1P09429 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HMGB1P09429 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC16.08■□□□□ 0.16
HMGB1P09429 PIGCP1-201ENST00000527583 895 ntBASIC16.08■□□□□ 0.16
HMGB1P09429 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC16.08■□□□□ 0.16
HMGB1P09429 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC16.08■□□□□ 0.16
HMGB1P09429 FOS-204ENST00000554617 796 ntTSL 2 BASIC16.08■□□□□ 0.16
HMGB1P09429 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC16.08■□□□□ 0.16
HMGB1P09429 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
HMGB1P09429 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGB1P09429 AC074138.1-201ENST00000611182 1303 ntBASIC16.08■□□□□ 0.16
HMGB1P09429 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGB1P09429 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGB1P09429 MLPH-202ENST00000338530 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGB1P09429 RBM15-204ENST00000617047 3284 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HMGB1P09429 AC083964.2-201ENST00000623988 2396 ntBASIC16.08■□□□□ 0.16
HMGB1P09429 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGB1P09429 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC16.08■□□□□ 0.16
HMGB1P09429 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC16.08■□□□□ 0.16
HMGB1P09429 ALDOA-213ENST00000564595 1663 ntTSL 2 BASIC16.08■□□□□ 0.16
HMGB1P09429 TMEM41A-203ENST00000421852 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGB1P09429 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
HMGB1P09429 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
HMGB1P09429 IP6K2-201ENST00000328631 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGB1P09429 HSD3B2-206ENST00000543831 1783 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
HMGB1P09429 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGB1P09429 POTEB3-201ENST00000611217 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGB1P09429 SLCO2A1-208ENST00000493729 1918 ntTSL 5 BASIC16.07■□□□□ 0.16
HMGB1P09429 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
HMGB1P09429 DNAL1-201ENST00000311089 2312 ntTSL 2 BASIC16.07■□□□□ 0.16
HMGB1P09429 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB1P09429 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC16.07■□□□□ 0.16
HMGB1P09429 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB1P09429 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
HMGB1P09429 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB1P09429 SLC39A11-201ENST00000255559 2737 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB1P09429 KLC2-206ENST00000417856 3015 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
HMGB1P09429 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC16.07■□□□□ 0.16
HMGB1P09429 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB1P09429 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC16.07■□□□□ 0.16
HMGB1P09429 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB1P09429 AC103563.1-201ENST00000429316 123 ntBASIC16.07■□□□□ 0.16
HMGB1P09429 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB1P09429 MAGEA5-201ENST00000446757 942 ntBASIC16.07■□□□□ 0.16
HMGB1P09429 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC16.07■□□□□ 0.16
HMGB1P09429 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB1P09429 EEF1GP8-201ENST00000506566 1154 ntBASIC16.07■□□□□ 0.16
HMGB1P09429 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC16.07■□□□□ 0.16
HMGB1P09429 AL031713.1-201ENST00000564813 661 ntBASIC16.07■□□□□ 0.16
HMGB1P09429 AC007952.4-201ENST00000573866 637 ntBASIC16.07■□□□□ 0.16
HMGB1P09429 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB1P09429 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
HMGB1P09429 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB1P09429 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB1P09429 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
HMGB1P09429 AC092115.1-201ENST00000566277 1402 ntBASIC16.07■□□□□ 0.16
HMGB1P09429 AC007431.1-201ENST00000578662 1412 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB1P09429 KRT8P19-201ENST00000551916 1455 ntBASIC16.07■□□□□ 0.16
HMGB1P09429 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB1P09429 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC16.07■□□□□ 0.16
HMGB1P09429 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB1P09429 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB1P09429 TESPA1-202ENST00000449076 2010 ntAPPRIS P3 TSL 2 BASIC16.07■□□□□ 0.16
HMGB1P09429 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB1P09429 CDK2-201ENST00000266970 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB1P09429 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB1P09429 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB1P09429 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC16.07■□□□□ 0.16
HMGB1P09429 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB1P09429 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC16.07■□□□□ 0.16
HMGB1P09429 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB1P09429 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC16.07■□□□□ 0.16
HMGB1P09429 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
HMGB1P09429 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB1P09429 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB1P09429 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB1P09429 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB1P09429 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB1P09429 MAT2B-204ENST00000518095 3409 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB1P09429 AP003969.2-201ENST00000623739 2275 ntBASIC16.06■□□□□ 0.16
HMGB1P09429 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB1P09429 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGB1P09429 PPM1K-201ENST00000295908 1940 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGB1P09429 AC004147.4-201ENST00000636421 1844 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGB1P09429 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
HMGB1P09429 KIF21B-204ENST00000461742 5428 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB1P09429 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGB1P09429 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB1P09429 APOL2-203ENST00000451256 1421 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
HMGB1P09429 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGB1P09429 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB1P09429 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms