Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 TMEM26-202ENST00000399298 5151 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SUMO3P55854 AC009093.1-201ENST00000566070 2099 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
SUMO3P55854 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SUMO3P55854 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SUMO3P55854 TLK1-202ENST00000360843 5726 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 TRAK1-201ENST00000327628 5293 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC12.32□□□□□ -0.44
SUMO3P55854 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
SUMO3P55854 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC12.32□□□□□ -0.44
SUMO3P55854 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
SUMO3P55854 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
SUMO3P55854 FUCA1P1-201ENST00000374476 1351 ntBASIC12.32□□□□□ -0.44
SUMO3P55854 MIR497HG-202ENST00000572453 3838 ntBASIC12.32□□□□□ -0.44
SUMO3P55854 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC12.32□□□□□ -0.44
SUMO3P55854 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC12.32□□□□□ -0.44
SUMO3P55854 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 NDRG4-236ENST00000566192 3265 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
SUMO3P55854 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC12.32□□□□□ -0.44
SUMO3P55854 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 MGLL-202ENST00000398101 1414 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 TPI1P3-201ENST00000335020 740 ntBASIC12.32□□□□□ -0.44
SUMO3P55854 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
SUMO3P55854 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC12.32□□□□□ -0.44
SUMO3P55854 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
SUMO3P55854 LYPLA2P1-203ENST00000447689 696 ntBASIC12.32□□□□□ -0.44
SUMO3P55854 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 AC104212.2-201ENST00000478813 628 ntBASIC12.32□□□□□ -0.44
SUMO3P55854 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC12.32□□□□□ -0.44
SUMO3P55854 HNRNPA1P56-201ENST00000505767 954 ntBASIC12.32□□□□□ -0.44
SUMO3P55854 METTL7AP1-201ENST00000547343 496 ntBASIC12.32□□□□□ -0.44
SUMO3P55854 AL137779.3-201ENST00000553295 729 ntBASIC12.32□□□□□ -0.44
SUMO3P55854 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC12.32□□□□□ -0.44
SUMO3P55854 RN7SL134P-201ENST00000579756 303 ntBASIC12.32□□□□□ -0.44
SUMO3P55854 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC12.32□□□□□ -0.44
SUMO3P55854 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC12.32□□□□□ -0.44
SUMO3P55854 LAMTOR5-AS1-209ENST00000597455 805 ntBASIC12.32□□□□□ -0.44
SUMO3P55854 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
SUMO3P55854 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 PLEKHA7-202ENST00000355661 4980 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 STRCP1-201ENST00000509801 5328 ntBASIC12.32□□□□□ -0.44
SUMO3P55854 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 FARS2-201ENST00000274680 1663 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 CANX-202ENST00000452673 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC12.32□□□□□ -0.44
SUMO3P55854 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
SUMO3P55854 PID1-202ENST00000392054 2745 ntTSL 2 BASIC12.31□□□□□ -0.44
SUMO3P55854 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
SUMO3P55854 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC12.31□□□□□ -0.44
SUMO3P55854 AC004241.5-201ENST00000623870 2448 ntBASIC12.31□□□□□ -0.44
SUMO3P55854 STX3-207ENST00000633708 3111 ntTSL 5 BASIC12.31□□□□□ -0.44
SUMO3P55854 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
SUMO3P55854 MYO9A-202ENST00000424560 4008 ntTSL 5 BASIC12.31□□□□□ -0.44
SUMO3P55854 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC12.31□□□□□ -0.44
SUMO3P55854 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC12.31□□□□□ -0.44
SUMO3P55854 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
SUMO3P55854 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
SUMO3P55854 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
SUMO3P55854 PLAT-201ENST00000220809 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
SUMO3P55854 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC12.31□□□□□ -0.44
SUMO3P55854 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 MIR33B-201ENST00000385104 96 ntBASIC12.31□□□□□ -0.44
SUMO3P55854 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 SNORD23-201ENST00000408876 110 ntBASIC12.31□□□□□ -0.44
SUMO3P55854 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC12.31□□□□□ -0.44
SUMO3P55854 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC12.31□□□□□ -0.44
SUMO3P55854 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC12.31□□□□□ -0.44
SUMO3P55854 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
SUMO3P55854 RPE-208ENST00000436630 1128 ntTSL 2 BASIC12.31□□□□□ -0.44
SUMO3P55854 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC12.31□□□□□ -0.44
SUMO3P55854 AC022201.1-201ENST00000452525 577 ntTSL 4 BASIC12.31□□□□□ -0.44
SUMO3P55854 AC018463.1-201ENST00000456674 917 ntBASIC12.31□□□□□ -0.44
SUMO3P55854 AC008026.2-201ENST00000495438 348 ntBASIC12.31□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms