Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC14.39□□□□□ -0.11
BDNFP23560 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 FAM90A21P-201ENST00000510875 1396 ntBASIC14.39□□□□□ -0.11
BDNFP23560 FAM90A15P-201ENST00000514465 1395 ntBASIC14.39□□□□□ -0.11
BDNFP23560 FAM90A6P-201ENST00000515148 1394 ntBASIC14.39□□□□□ -0.11
BDNFP23560 FAM90A16P-201ENST00000526662 1395 ntBASIC14.39□□□□□ -0.11
BDNFP23560 FAM90A9P-201ENST00000527940 1395 ntBASIC14.39□□□□□ -0.11
BDNFP23560 FAM90A5P-201ENST00000528738 1395 ntBASIC14.39□□□□□ -0.11
BDNFP23560 FAM90A14P-201ENST00000530386 1395 ntBASIC14.39□□□□□ -0.11
BDNFP23560 FAM90A13P-201ENST00000534703 1395 ntBASIC14.39□□□□□ -0.11
BDNFP23560 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC14.39□□□□□ -0.11
BDNFP23560 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
BDNFP23560 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC14.39□□□□□ -0.11
BDNFP23560 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC14.39□□□□□ -0.11
BDNFP23560 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC14.39□□□□□ -0.11
BDNFP23560 BPIFB5P-201ENST00000457066 1099 ntBASIC14.39□□□□□ -0.11
BDNFP23560 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
BDNFP23560 AC024293.1-201ENST00000467930 498 ntBASIC14.39□□□□□ -0.11
BDNFP23560 ALG1L3P-201ENST00000503331 765 ntBASIC14.39□□□□□ -0.11
BDNFP23560 TBC1D3P6-201ENST00000505954 962 ntBASIC14.39□□□□□ -0.11
BDNFP23560 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 C14orf132-201ENST00000553764 562 ntTSL 4 BASIC14.39□□□□□ -0.11
BDNFP23560 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
BDNFP23560 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
BDNFP23560 AC011247.3-201ENST00000603297 438 ntBASIC14.39□□□□□ -0.11
BDNFP23560 AC006483.2-201ENST00000609813 515 ntBASIC14.39□□□□□ -0.11
BDNFP23560 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC14.39□□□□□ -0.11
BDNFP23560 AC026336.4-201ENST00000624565 1050 ntBASIC14.39□□□□□ -0.11
BDNFP23560 STAMBP-204ENST00000409707 1649 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
BDNFP23560 AL359845.1-201ENST00000458202 1648 ntBASIC14.39□□□□□ -0.11
BDNFP23560 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
BDNFP23560 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC14.39□□□□□ -0.11
BDNFP23560 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
BDNFP23560 AC004623.1-201ENST00000624592 2127 ntBASIC14.39□□□□□ -0.11
BDNFP23560 NT5DC4-201ENST00000327581 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 AC005562.1-201ENST00000583030 3219 ntBASIC14.39□□□□□ -0.11
BDNFP23560 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC14.39□□□□□ -0.11
BDNFP23560 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 ADRA1A-210ENST00000519229 1838 ntTSL 5 BASIC14.38□□□□□ -0.11
BDNFP23560 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
BDNFP23560 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 ZCCHC8-207ENST00000543897 5663 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC14.38□□□□□ -0.11
BDNFP23560 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 CCT6P3-201ENST00000419314 3702 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC14.38□□□□□ -0.11
BDNFP23560 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
BDNFP23560 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 CICP17-201ENST00000418553 2377 ntBASIC14.38□□□□□ -0.11
BDNFP23560 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
BDNFP23560 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 SH3BGRL3-202ENST00000319041 768 ntTSL 2 BASIC14.38□□□□□ -0.11
BDNFP23560 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 NALT1-202ENST00000450304 437 ntTSL 3 BASIC14.38□□□□□ -0.11
BDNFP23560 AL135901.1-201ENST00000451812 333 ntBASIC14.38□□□□□ -0.11
BDNFP23560 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC14.38□□□□□ -0.11
BDNFP23560 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC14.38□□□□□ -0.11
BDNFP23560 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC14.38□□□□□ -0.11
BDNFP23560 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC14.38□□□□□ -0.11
BDNFP23560 RPL29P2-202ENST00000498671 657 ntBASIC14.38□□□□□ -0.11
BDNFP23560 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC14.38□□□□□ -0.11
BDNFP23560 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC14.38□□□□□ -0.11
BDNFP23560 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC14.38□□□□□ -0.11
BDNFP23560 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC14.38□□□□□ -0.11
BDNFP23560 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC14.38□□□□□ -0.11
BDNFP23560 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
BDNFP23560 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
BDNFP23560 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 GDAP2-201ENST00000369442 2436 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
BDNFP23560 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms