Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC006033.1-201ENST00000440505 426 ntBASIC13.24□□□□□ -0.29
FOXA1P55317 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 AC114947.1-202ENST00000514136 344 ntBASIC13.24□□□□□ -0.29
FOXA1P55317 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 DNM1P51-201ENST00000558149 522 ntBASIC13.24□□□□□ -0.29
FOXA1P55317 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC13.24□□□□□ -0.29
FOXA1P55317 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC13.24□□□□□ -0.29
FOXA1P55317 NAT9-211ENST00000580632 799 ntTSL 3 BASIC13.24□□□□□ -0.29
FOXA1P55317 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC13.24□□□□□ -0.29
FOXA1P55317 ABL2-207ENST00000507173 3177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 API5-208ENST00000531273 1868 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA1P55317 AL031587.5-201ENST00000624344 1849 ntBASIC13.24□□□□□ -0.29
FOXA1P55317 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
FOXA1P55317 IWS1-201ENST00000295321 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 GFI1B-202ENST00000372122 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 RTL5-202ENST00000609883 4105 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
FOXA1P55317 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
FOXA1P55317 MAD1L1-201ENST00000265854 2718 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC13.24□□□□□ -0.29
FOXA1P55317 ZFAND3-203ENST00000373391 3001 ntTSL 5 BASIC13.23□□□□□ -0.29
FOXA1P55317 KLF4-206ENST00000610832 1956 ntTSL 5 BASIC13.23□□□□□ -0.29
FOXA1P55317 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
FOXA1P55317 SNX12-202ENST00000374274 2376 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
FOXA1P55317 SLC47A1-201ENST00000270570 3280 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 SH2D5-201ENST00000375031 3705 ntTSL 2 BASIC13.23□□□□□ -0.29
FOXA1P55317 PLIN3-201ENST00000221957 2333 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
FOXA1P55317 NR3C1-204ENST00000394466 3245 ntAPPRIS ALT1 TSL 5 BASIC13.23□□□□□ -0.29
FOXA1P55317 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC13.23□□□□□ -0.29
FOXA1P55317 SMTN-203ENST00000358743 3198 ntAPPRIS P4 TSL 2 BASIC13.23□□□□□ -0.29
FOXA1P55317 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 DUSP11-202ENST00000443070 2175 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC13.23□□□□□ -0.29
FOXA1P55317 STAT6-202ENST00000454075 3037 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
FOXA1P55317 PAK1-215ENST00000530617 3001 ntTSL 2 BASIC13.23□□□□□ -0.29
FOXA1P55317 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC13.23□□□□□ -0.29
FOXA1P55317 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
FOXA1P55317 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
FOXA1P55317 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC13.23□□□□□ -0.29
FOXA1P55317 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC13.23□□□□□ -0.29
FOXA1P55317 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC13.23□□□□□ -0.29
FOXA1P55317 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC13.23□□□□□ -0.29
FOXA1P55317 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC13.23□□□□□ -0.29
FOXA1P55317 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC13.23□□□□□ -0.29
FOXA1P55317 AC091804.1-201ENST00000486888 567 ntBASIC13.23□□□□□ -0.29
FOXA1P55317 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC13.23□□□□□ -0.29
FOXA1P55317 AC145285.5-201ENST00000562217 361 ntBASIC13.23□□□□□ -0.29
FOXA1P55317 AC095350.1-204ENST00000585405 616 ntTSL 5 BASIC13.23□□□□□ -0.29
FOXA1P55317 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC13.23□□□□□ -0.29
FOXA1P55317 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC13.23□□□□□ -0.29
FOXA1P55317 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 AC009145.4-201ENST00000625119 1294 ntBASIC13.23□□□□□ -0.29
FOXA1P55317 PRMT7-201ENST00000339507 4238 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
FOXA1P55317 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC13.23□□□□□ -0.29
FOXA1P55317 SCARA5-202ENST00000380385 2934 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 CUL4A-204ENST00000451881 3724 ntTSL 5 BASIC13.23□□□□□ -0.29
FOXA1P55317 PIGS-202ENST00000308360 2877 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 KRT42P-201ENST00000398469 2864 ntTSL 2 BASIC13.23□□□□□ -0.29
FOXA1P55317 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
FOXA1P55317 PIK3R5-220ENST00000623421 4318 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 TBC1D22B-201ENST00000373491 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 TRIM21-201ENST00000254436 1924 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 CCDC163-203ENST00000626657 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 WDR92-201ENST00000295121 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 GOLGA8A-201ENST00000359187 1877 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 TRPV1-206ENST00000571088 4105 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 PEX1-204ENST00000438045 3329 ntTSL 2 BASIC13.23□□□□□ -0.29
FOXA1P55317 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC13.23□□□□□ -0.29
FOXA1P55317 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
FOXA1P55317 ZCRB1-201ENST00000266529 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA1P55317 FAM156B-201ENST00000416841 2537 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA1P55317 MATN2-211ENST00000521689 3554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA1P55317 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA1P55317 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA1P55317 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA1P55317 MKX-201ENST00000375790 3846 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA1P55317 TTK-201ENST00000230510 3477 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms